Corynebacterium sp. Z-1: RIU96_07160
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Entry
RIU96_07160 CDS
T11129
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
core Corynebacterium sp. Z-1
Pathway
core03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
core00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RIU96_07160 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
core03021
]
RIU96_07160 (rho)
03019 Messenger RNA biogenesis [BR:
core03019
]
RIU96_07160 (rho)
Transcription machinery [BR:
core03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RIU96_07160 (rho)
Messenger RNA biogenesis [BR:
core03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RIU96_07160 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
WNI12018
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All DBs
Position
1461289..1463220
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AA seq
643 aa
AA seq
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MTDTGNAAHGATQGNDHQDLATMKLPELRKLAAEKGLKGISALRKGDLIQAITTGEVPKR
ASAAAPEEPAEAAAPRRRATRRAGGAAEADNAGADNSGANNADNSGSEDERRGQDNSSQD
NSSQDEQRYESRSAARRARRNRARNSGGEGSNEGSHDNEDGNNAQDDNRDNHRNHDGDNR
DNRDDRGDNRDSRDSRNNNRNHGNDDRNRDNQSNDDGNRRGRRNRRNRNRNGRDDNRDNR
DNNRNNNQDFNPEDLQEVAGIVDVVDNNTAFVRTTGYRASQADVFIHNKLVRQNGLRSGD
AVIGQVRANGQSHSHGNGRNRQRYNQLVRVDSVNAMSPENAKQRKEFHKLTPLYPNQRLR
LETEPNILTTRVIDLVMPLGKGQRALIVSPPKAGKTTIMQNIANAIATNNPECYLMVVLV
DERPEEVTDMQRSVKGEVISSTFDRPPSEHTAVAELAIERAKRLVEMGQDVVVLLDSITR
LGRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIEEGGSLTIIATAMVETGSAGDT
VIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLAPEEARIMHKLRRILSA
LDPQQSIDMLIKQLKKTKSNGEFLMGVAQSAPMAADQNEEEYL
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacacgggcaatgctgcacacggcgctacgcaaggcaatgaccaccaagacctg
gcgacaatgaagctccctgagctgcgcaagctggccgcagagaagggtctgaagggcatt
tccgctttgcgcaagggcgacctgatccaggctatcaccaccggtgaggtgccgaagcgg
gcttcagcggcggcgccggaggagccggccgaggctgccgccccccgccgccgcgcgacc
cgacgggccggcggtgcagccgaggccgataacgcaggcgctgacaactcgggcgctaac
aacgccgacaactccggttccgaggacgagcgccgcggccaggacaactcctcgcaggac
aactcctcgcaggacgagcagcgctacgagtcgcgatctgcggcgcgccgggcacgtcgc
aaccgcgcccgtaacagcggtggcgaggggtcgaacgagggctcccacgacaacgaagac
ggcaacaacgcgcaggacgataaccgcgacaaccaccgcaaccacgacggggacaaccgc
gacaaccgggatgatcgcggcgacaaccgcgacagccgcgatagccgcaacaacaaccgc
aaccacggcaacgacgaccgcaaccgggacaaccagtccaacgacgacggcaaccgccgc
ggtcgccgcaaccgtcgcaaccgcaaccgcaacggccgcgacgacaacagggacaaccgg
gataacaaccgcaacaacaaccaggacttcaaccctgaggacctgcaggaagttgccggc
atcgtcgacgtagtggacaataacaccgcctttgttcgcaccaccggttaccgcgccagc
caggcggacgtgttcatccacaacaagctggtgcgccagaacggcctgcgctccggtgac
gcggtgattggccaggtccgtgccaacggccagagccactcccacggcaacggacgcaac
cgccagcgctacaaccagcttgtgcgcgtcgattccgtcaacgccatgagcccggagaac
gcgaagcagcgcaaggagttccacaagctcaccccgctgtacccgaaccagcgcctgcgt
ttagagacggagccgaacatcctgaccacgcgcgtgatcgacctggtcatgccgctgggt
aagggccagcgcgcgctgatcgtctccccgccgaaggccggcaagacgacgatcatgcag
aacatcgcgaacgcgattgccacgaacaacccggagtgctacctcatggtcgtgcttgtc
gacgagcgccccgaggaagtcaccgacatgcagcgctcggttaagggcgaggtcatttcc
tcgacgttcgaccgcccgccgtcagagcacaccgccgtcgctgagctggccatcgagcgc
gccaagcgcctggtggagatgggccaagacgtcgtcgtcctgctcgactcgatcacccgc
ctcggccgcgcgtacaacaactcctcgccggcgtcgggccgcatcctgtccggtggtgtc
gactccaatgcgctgtacccgccgaagcgtttcctgggtgccgcgcgcaatatcgaggag
ggcggctcgctgacgatcatcgccacggcgatggtggagacgggttccgccggtgacacc
gtgatctttgaggagttcaagggcacgggcaatgccgagctcaagctcgatcgcaagatc
gcagagcgccgcgtcttcccggctgtggacgtcaacccttccggcacccgcaaggacgag
ctcctgctggcaccggaggaggcgcgcatcatgcacaagctgcgccgcatcctctccgcg
ctcgacccgcagcagtccatcgacatgctgatcaagcagctgaagaagacgaagtccaac
ggcgagttcctcatgggtgtcgcgcagtcggcgccgatggcggctgaccagaacgaggag
gaatacctctga
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