Corynebacterium sp. Z-1: RIU96_09415
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Entry
RIU96_09415 CDS
T11129
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
core Corynebacterium sp. Z-1
Pathway
core03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
core00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RIU96_09415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
core03019
]
RIU96_09415
Messenger RNA biogenesis [BR:
core03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RIU96_09415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
BLTP1_N
Motif
Other DBs
NCBI-ProteinID:
WNI12424
LinkDB
All DBs
Position
complement(1926324..1928468)
Genome browser
AA seq
714 aa
AA seq
DB search
MNEPRNRARKVTRKAGPPEPADQKPVFQAPEQAPAAPEASAQQDGNDNRDRSKDSGDGNN
NNGNNRGGNGNNNRGGNNNHGDNGNNGNNGNNNGGRNRRRGRGRGSNGGNNRGGNGGNEG
GQNRRNPMKGMQGADLTKRLPTPPQAPNNGLRIYALGGISEIGRNMTVFEYNGRLLVVDC
GVLFPNSGEPGVDLVLPDFGPIENKLDKIEALIVTHGHEDHIGAIPWLLKLRPDIPIYSS
RFTNALIAAKTKEHRQRPKLNEVTKDSELNLGPFRIRFWHVGHSIPECLGVSIKTGAGHV
VMTGDIKLDQTPYDGQPTDLPALSRFGDEGIDLFMCDSTNATVPGISSSEKGIEENLTRL
VQGAKQRVIISSFASNVARVQMAVNAAVANGRKVAFNGRSMIRNMEIAEKMSLLRAPRGT
IIPIEEAAKMAPHKVVLITTGTQGEPMAALSRMSRREHRQITVRDGDLIILSSSLIPGNE
EAVFAVINNLAQIGATVITNDDAHVHASGHGYAGELLFLYNAARPKGAMPVHGEWRHMRA
NKELAISTGVKPENTALAQNGVVVDMVGGKINVVGQYQVGQLYVDGETMGDVDPDVLADR
TSLASGGVVSITCVIDDRTGRLLETPRVSTTGFSDDDRDFNKKVAEGVETVMNDLAAQGE
NDPYRMVQQLRRHVSKAIEQKYKREPVILPTVVPMAADNVPFDDADVDAARESL
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaccccgcaatcgcgcccgcaaggtgacccgcaaggctgggcccccagagccg
gccgatcagaagccggtgttccaggcgccggagcaggcccctgcagcacccgaggcttcc
gcacagcaggacggcaacgacaaccgtgaccgctcgaaggattccggcgacggcaataac
aacaacggcaacaaccgcggcggcaacggtaacaacaaccgtggcggcaacaacaaccac
ggtgacaacggcaacaacggcaacaacggcaacaacaatggcggccgcaaccgccgccgc
ggccgtggacgtggttccaacggcggcaacaaccgcggtggcaacggcggaaatgagggt
ggccaaaaccgtcgcaacccgatgaagggcatgcagggcgcggatctgactaaacgcctt
cccaccccgccgcaggcaccgaacaacggtctgcgcatctacgctctcggtggcatctcc
gagatcgggcgcaacatgaccgtgttcgagtacaacggccgcctgctcgtcgtcgactgc
ggcgtgctgttcccgaactccggtgaaccgggcgtcgacctggtcctgccggacttcggt
cccatcgagaataagctggacaagatcgaggcactgattgtcacccacggtcacgaagac
cacatcggtgcgatcccgtggctgctcaagctgcgccccgacattccgatctactcctcg
cgcttcaccaacgcgctgatcgcggcgaagacgaaggagcaccgccagcgtccgaagctc
aacgaggtgaccaaggattccgagctcaaccttggcccgttccgcatccgcttctggcac
gtcggccactccattccggagtgcctgggcgtgtccatcaagacgggcgcgggccacgtg
gtgatgacgggcgacatcaagctcgatcagaccccgtacgacggtcagcccaccgacctg
cccgcgctgtcgcgctttggcgacgagggcatcgacctgtttatgtgcgattccaccaac
gccacggtgccgggaatttcctcctcggagaagggcattgaggaaaacctcacccgcctg
gttcagggcgcgaagcagcgcgtgatcatctcctcgttcgcctccaatgtggcgcgcgtg
cagatggcggtcaacgccgcggtcgcgaacggccgcaaggtggccttcaacggccgctcg
atgattcgcaacatggagatcgcggagaagatgagcctgctgcgcgccccgcgcggcacg
atcatcccgatcgaggaggccgcaaagatggccccgcacaaggtcgtgctcatcaccacc
ggtacccagggcgagcccatggcggcgctgtcgcgtatgtcgcgacgcgagcaccgccag
atcacggtgcgcgacggcgacctgatcatcctgtcgtcctcgctcatcccgggcaacgag
gaagccgtctttgcggtgatcaacaacctcgcgcagatcggcgcgacggtgatcaccaac
gacgacgcgcacgtccacgcctcgggccacggctatgccggcgagcttttgttcctgtac
aatgcggcgcgcccgaagggtgcgatgccggtgcacggcgagtggcgccacatgcgcgcc
aacaaggagctggcaatctccaccggcgtgaagccggagaacacggcccttgcacagaac
ggtgtcgtggtggacatggtcggcggcaagatcaacgtcgtcggacagtaccaggtcggc
cagctctacgtcgacggcgagaccatgggcgatgtggacccggacgtgctggccgatcgc
accagcctcgcctccggcggcgttgtgtcgatcacctgcgtcatcgacgaccgcacgggc
cgtctcttggagacgcctcgcgtgtcgacgaccggcttctccgacgatgaccgcgacttc
aacaagaaggtcgccgagggcgtcgaaacggtcatgaacgacctggctgcgcagggtgag
aatgacccgtaccgcatggtgcagcagctgcgtcgccacgtgtcgaaggcgatcgagcag
aagtacaagcgcgagcctgtcatcctgccgacggtggtgccgatggcggccgacaacgtc
ccctttgacgacgccgatgtcgacgccgcgcgcgagtcgctttaa
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