Corynebacterium sp. Z-1: RIU96_09440
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Entry
RIU96_09440 CDS
T11129
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
core Corynebacterium sp. Z-1
Pathway
core03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
core00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RIU96_09440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
core03019
]
RIU96_09440
03016 Transfer RNA biogenesis [BR:
core03016
]
RIU96_09440
Enzymes [BR:
core01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RIU96_09440
Messenger RNA biogenesis [BR:
core03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RIU96_09440
Transfer RNA biogenesis [BR:
core03016
]
Prokaryotic type
tRNA degradation factors
RIU96_09440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
KH_1
S1
KH-I_KHDC4-BBP
KH_2
MnmE_helical
OB_cyt-4
Coatomer_g_Cpla
Motif
Other DBs
NCBI-ProteinID:
WNI12428
LinkDB
All DBs
Position
complement(1931898..1934156)
Genome browser
AA seq
752 aa
AA seq
DB search
MSTHTPNNSFDIHVDEDFGITEAVAVLDNGDFGSRTIRFETGQLARQAGGSVTTYLDEDT
MLLATTTASKNPRDNIDFFPLTVDVEERMYAAGKIPGSFFRREGRPSTEAILACRLIDRP
LRPTFVKGLRNEVQVVITVLSMNPEEYYDVVAINGASAATQLSGLPVSGAVGGVRMALIA
DDKHPEGQWVAFPNHEQHDHSVFEMVVAGRVVDGDVAIMMVEAGAGASVVKLVADGAPAP
TEATVAEGLEAAKPFIKTLCEAQAALAEETAKETQEFPLFPAYSDKVYSAVEKKATKKLA
TLLAIKGKKDRDDATNAYMEEIEEALLDQFDIDDEDEYTQAVKEIRAAYNALMRKIVREK
ILTEGFRIDGRGVSDIRDLEVEVELIPRAHGSALFERGETQILGVTTLDMLKMEQTLDSL
HPETAKRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPVIPTREEFPYTIRQV
SEALGSNGSTSMGSVCASTLSLYNAGVPLAAPVAGIAMGLVSGEVNGATKYVALTDILGA
EDAFGDMDFKVAGTPDFITALQLDTKLDGIPSEVLVSALEQARDAREAILDTMGEVIDGP
DEMNPLAPKITAISVPVSKIGEVIGPKGKMINSITEETGAEISIEDDGTIYVSAATGESA
DAAIDKINGIANPQMPKVGERYLGTVVKTVAFGAFVSILPGTDGLVHISKLGGSQRIEKV
EDVVNVGEKIEVEIADIDNRGKISLVPVGEDD
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
ttgagcacgcatacccccaataacagcttcgacatccacgtcgacgaggacttcggcatc
accgaggctgtcgcggtactcgacaacggcgactttggttcgcgcaccatccgttttgaa
acggggcagctcgcgcgccaggcgggcgggtctgtcacgacctacctcgacgaggacacg
atgctgctggccacgaccaccgcgtcgaagaacccgcgcgacaacatcgacttcttcccg
ctgaccgttgacgttgaggagcgcatgtacgccgcgggcaagatcccgggctcgttcttc
cgccgcgagggccgcccttccaccgaggcgatcctggcctgccgtctcatcgatcgcccg
ctgcgcccgacctttgtcaaggggctgcgcaacgaggtccaggttgtcatcaccgtgctc
agcatgaaccccgaggagtactacgacgtcgtcgcgattaacggcgcgtccgccgcgacc
cagctttcgggcctgcccgtctccggcgcggtcggcggggtgcggatggcgctcatcgcc
gacgacaagcaccccgagggacagtgggtggcgtttcccaaccacgagcagcacgaccac
tccgtgttcgagatggtcgtcgccggtcgcgtggtcgacggtgacgtcgcgatcatgatg
gtggaggctggcgctggggcgagcgtcgtcaagcttgttgctgacggtgctcccgcgccg
accgaggccaccgtcgccgagggcctggaggccgcgaagccgtttattaagacgctgtgc
gaggcccaggctgctctcgccgaggagacggcgaaggaaacccaggagttcccgctgttt
cctgcatactccgacaaggtctactccgcggtggagaagaaggccacgaagaagttggcc
accctgctcgccatcaagggcaagaaggaccgcgacgacgcgaccaacgcctacatggaa
gagatcgaggaggcgctgctggaccagttcgacatcgacgatgaggacgagtacacacag
gcagtcaaggaaatccgcgcggcctataacgcattgatgaggaagatcgtgcgcgagaag
atcctcaccgagggcttccgtatcgacggccgcggggtcagcgacatccgcgacctcgag
gtcgaggtcgagctcatcccgcgcgcccacggctccgccctgttcgagcgcggcgagacc
cagattctcggcgtgaccaccctcgacatgctcaagatggaacagacgctggattcgctg
cacccggagaccgcgaagcgctacatccaccactacaacttcccgccgtactccaccggc
gagacgggccgcgtcggttcgccgaagcgccgcgagatcggccacggggcccttgccgag
cgcgcgctcgtgccggtgatcccgactcgcgaggagttcccgtacaccatccgccaggtc
tccgaggccctcggctccaacggctcgacctcgatgggctccgtgtgcgcctccacgttg
tcgctgtacaacgcgggcgtgccgctggcggccccggttgccggtatcgcgatgggtctc
gtctccggtgaggtcaacggcgctaccaagtacgtcgccctgaccgacatcctgggcgcg
gaggacgcgttcggcgacatggacttcaaggtcgcgggaacccccgacttcatcaccgcg
ctgcagctcgacaccaagctcgacggcatcccctctgaggtgctggtgtccgctctggag
caggcccgcgacgcgcgcgaggcaatcctggacaccatgggggaggtcattgacggcccc
gacgagatgaacccgctcgcgccgaaaatcacggcgatcagcgtgcccgtgtccaagatc
ggcgaggtcatcggacccaagggcaagatgatcaactcgatcaccgaggaaaccggcgcg
gagatttcgatcgaggacgacggcaccatctacgtctccgcggcgaccggcgaatcggcg
gacgcggcgattgacaagatcaacggcatcgccaacccgcagatgccgaaggtcggcgag
cgttacctaggcaccgtggtcaagacggtcgcgttcggcgcgttcgtctccatcctgccg
ggcaccgacgggctggtgcacatctctaagctcggcggctcgcaacgcatcgagaaggtc
gaggacgtggtcaacgtcggcgagaagatcgaggtggagatcgccgacatcgacaaccgc
ggcaagatctcgctggtccccgtcggtgaagacgactag
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