Corynebacterium sp. NML98-0116: BJP05_07950
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Entry
BJP05_07950 CDS
T10271
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
corn Corynebacterium sp. NML98-0116
Pathway
corn03420
Nucleotide excision repair
corn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
corn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BJP05_07950
03430 Mismatch repair
BJP05_07950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
corn03400
]
BJP05_07950
Enzymes [BR:
corn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJP05_07950
DNA repair and recombination proteins [BR:
corn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BJP05_07950
MMR (mismatch excision repair)
Other MMR factors
BJP05_07950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AOX06084
LinkDB
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Position
complement(1737253..1740552)
Genome browser
AA seq
1099 aa
AA seq
DB search
MADFTPQELFQALGDAFPPSDQQADVIGAEPGPMLVVAGAGAGKTKTMADRVVWLVANGY
VRPEEVLGLTFTRKAARELGQRIRNRLQALARHRELVRELDPSGALAESLEVIAPTVATY
DSYAGELVRDYGLLVPVEPDARLITQAELHAIAVEVVSNYNKPLIAEGAPAPAMSTVVED
LLKLTTAMGNALADPNDIYEAAEIFLKETESLPKSPRSKTEFCKTMTGWRNKQRQRQLML
PLVEELNAALRERGVVTFNEQMNIAATLAEQHASVGAAQRQKYRVVMLDEYQDTSHSQRV
LLRSLFGEGQDPTLTVTAVGDPMQAIYGWRGATSENLAAFVEDFPAAGGVPAQKKQLTIS
WRNPSKVLEMANQVSTAILGSGEDRAVAPLEPRKDAAAGDVEMQFFQREEEEIEFVADAL
QQQFEQGGKLSAAVLTRKNRHAQPIAQALEARGVPYEIVGLGGLLDTPEVQDTLAVATML
VRPEDSEAALRVLGGPSVGLGLADMEALAARAKNLQARADGPAAEEEAARPVPADPEERL
IEELTQLALEAEALKMQSAKPAGLADAVADLGEPERYSEEGYKRLQLLASRLRQLRRNSL
GKRLSDLFADIIEVFGIRVEVLARRSSAGTVHLDQLLHYVEEYPGTSVEALLDYFELAKQ
QEDGLAPGNVTVRGDRVQILTVHKAKGLEWDTVAVLHADKDTYSSKIETFLAQIPFLQPE
TFGDPDIYEEFAEVEHRTQFKNAANAWRKHIGEDLAEEQARLFYVAITRTENRLLLTGSN
ISLGGKKNTNGPYEHFAAFEGLELPEQVEDEDAEKTVQQPEMAVGTWPVQSYEAAHAASS
QATRPSELVRDALETEIAPAAGELYELWERDATALIEEHKAAQSPDVPVMLPGELTASDV
VAMQADVEQFARRARRPVPFKPNQYAKRGTAFHEWIEDFYGAHPLLTEDELPGMGEFEVD
PSMLQKLKANFENSHWASKTPTHVECPFELALGKAVVRGRMDAVFADGDGWVVVDWKTGN
RPVGAAMEAAKLQLAVYTEAWKRIANDGRPVKAVFFYVRDGKDFTATELPDAQQLTKLLE
DAANGATSGTVSRRSSEEG
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttcacaccccaggaactcttccaggcgctcggggacgcatttccccctagc
gaccagcaggcggacgtgattggtgccgagccggggccgatgctggtcgtggccggcgct
ggtgcgggcaagacaaagacgatggcggaccgcgtggtatggctcgtcgccaacgggtat
gtgcggccggaggaagtcctcggcttgacgtttacccgcaaggcggcccgcgagctgggg
cagcggatccggaaccggctgcaggcgttggctcgtcaccgggagctcgtacgggagctt
gatccttcgggcgcgctggcggaaagcctggaggttatcgcgccgactgttgctacgtac
gactcgtacgcgggcgagctcgttcgcgactacgggctgctcgtcccggtggagccggac
gcgcgcctgattacgcaggctgagctgcacgcgatcgccgtcgaagtcgtgagcaattac
aacaaaccactcatcgcggaaggtgcccctgcccccgcgatgagcacagtggtggaggac
ctactgaagctcaccacggcgatgggcaacgcactggcagatccaaacgatatttacgag
gccgcggagatcttcctgaaagagacggaatcgctaccgaagtcgccgcggagcaaaacc
gaattctgcaagaccatgacggggtggcgcaacaagcagcgccagcgccagttgatgttg
ccgctggttgaggagcttaacgcggcgctgcgtgagcgtggtgtggtcacgttcaacgag
caaatgaacattgcggccacgctcgcggagcagcacgcgtccgtcggtgctgcgcagcgg
cagaagtaccgcgtggtcatgctcgacgagtaccaggacacctcgcattcgcaacgagtg
ttgctgcgcagcctgtttggcgagggccaggaccccacgttgacggtgactgcggtgggc
gacccgatgcaggcaatctacggctggcgcggggcgacgtcggaaaacctcgcggcattc
gtggaggatttccctgccgcgggcggtgtaccggcgcagaagaagcagctcaccatctcc
tggcgtaacccgagcaaggtgcttgagatggcgaaccaggtctccaccgcgatccttggc
agcggggaagatcgggccgtcgcgcctctggagccacgcaaggacgctgcggcaggcgac
gtggagatgcagttcttccagcgggaggaggaagaaattgagttcgttgccgacgcgctg
cagcagcagtttgagcagggcggtaagctctcggccgcggtgctgaccaggaagaacagg
catgcgcagccgatcgcccaggcgcttgaggcccgcggtgtgccgtatgagatcgtgggg
ctcggcggcctgctggataccccggaggtacaggacacgttggctgtggccacgatgttg
gtccgccccgaggattctgaggcggcactgcgcgtgctgggtgggccgtcggtcgggctc
gggctggcggatatggaggcgctcgccgcgcgtgccaagaacctgcaagcccgcgcggac
ggtccggccgcggaggaggaagcagccaggccggtgcccgcggacccagaggagcgcctt
atcgaggagctgacgcagcttgcactcgaggcggaggcgctgaagatgcagtcggcgaag
cccgcgggcctggcggacgcggtggcggacctgggcgagccagagcgctacagcgaggaa
ggctacaagcgcctgcagctgctggcgtcgcggctgcgacagctgcggcgcaattcgctg
ggcaagcggctcagtgacttgttcgcggacatcatcgaggtcttcggtattcgcgttgag
gtgctggcgcggcgctcgtcggcaggcacggtgcacttggaccagctgctgcactacgtc
gaggagtacccgggcacgagcgtggaagcgctgctggactacttcgagttggcgaagcag
caggaggacgggcttgcgccgggtaacgtcaccgtgcgcggggaccgcgtgcagatcctg
acggtgcacaaggcgaagggcctggagtgggataccgtcgctgtgttgcacgcggataag
gacacctacagctcaaagattgagaccttccttgcccagatcccattcctgcagcctgag
acgttcggtgacccggacatctacgaggagttcgcagaggtagagcaccgcacgcagttt
aagaacgctgccaatgcgtggcgcaagcacatcggcgaggatctcgctgaggagcaggcg
cgcctgttctacgtggctatcacacgtacggaaaacaggctgttgcttaccgggtcgaac
atctctctgggcggcaaaaagaatacgaacgggccgtacgagcacttcgcggcgttcgag
ggcctcgagctgccggagcaggtcgaggacgaggatgcggagaaaacggtacagcagccg
gagatggccgtcggcacgtggcctgtgcagtcctacgaagccgcgcacgccgccagtagt
caggccactcgcccgagtgagctggtcagggacgcgctcgagaccgaaatcgcgcccgcg
gccggcgagctctacgagctgtgggagcgcgacgccaccgcgctcatcgaggaacacaag
gcggcgcagtcgccggacgtgcccgtcatgctgcctggtgagctgaccgcctcagacgtg
gtggccatgcaggcggacgtggaacagttcgcgcgccgggcacgtcgcccggtgccgttc
aagccgaaccagtacgcgaagcgcggcaccgcattccacgagtggatcgaggatttctac
ggtgcgcacccgctgctcactgaggacgagctgccgggcatgggcgagtttgaggtggac
ccgtcgatgctgcagaagctgaaagccaacttcgagaacagtcactgggcgtcgaagacg
ccgacgcacgtggagtgcccgtttgagctggcgctcggcaaggcggtggtgcgcggccgc
atggacgcggtctttgcggacggcgacggctgggtcgtggtggactggaagaccggcaac
cgcccggtgggtgcggcgatggaggcagcgaaactgcagcttgccgtgtacacggaggcg
tggaagcgaatcgccaacgatggccgcccagtgaaggccgtgttcttctatgtccgcgac
ggaaaggacttcaccgcgacggagcttccggatgcgcagcagctgacgaagttgttggaa
gatgcagcaaacggcgcaacttccggtacagtttcacgccgtagtagcgaggaaggatag
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