Corynebacterium sp. NML98-0116: BJP05_09015
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Entry
BJP05_09015 CDS
T10271
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
corn Corynebacterium sp. NML98-0116
Pathway
corn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
corn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BJP05_09015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
corn03021
]
BJP05_09015
03400 DNA repair and recombination proteins [BR:
corn03400
]
BJP05_09015
Enzymes [BR:
corn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BJP05_09015
Transcription machinery [BR:
corn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BJP05_09015
DNA repair and recombination proteins [BR:
corn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BJP05_09015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AOX06276
LinkDB
All DBs
Position
complement(1948621..1952619)
Genome browser
AA seq
1332 aa
AA seq
DB search
MFDVNLFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDEEARHNDMSTLEAEMLLEKKEVEQDANAEIAERAQKLEED
LAELEAAGATAAARKKVQNAADKEMQHIREAGEREVERLDEIWSTFQKLAPKQMIIDEFL
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLEAEAEELRTIIAEGKGQKKVRALKRLKVVA
AFQRSGNDPAGMILDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKMHECGLPKLMALELFKPFVMKRLVDNEYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVLLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTMEKGEDEIGGE
GRFTPSDENGPAKGVYSSYREAIMAYDLGVLGLQAPIKVRIDHLRPTIEIEAEQFPDGWS
KGQAWMMETTLGRIMFNELLPFNFPYQEGAMVRKGGGAGKVLLGDIIQSMVEKYPMITVA
QTLDKLKDAGFYWATRSGVTISMSDVLVLPNKTEILEQYEQRAEEIERKYWEKGALTEEN
RYDRLVELWQDATNQVGEAVEALYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSRG
EYITRPIKTSFREGLTVMEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREH
DCGTRQGVKVPVAQLAGEKFVRDEFVETSVAGRVLASDAKDAEGNVVLEADAELSEERID
ALVAAGVEEVKVRSVLTCQTPTGVCAKCYGKSMASGKLVDIGEAVGIVAAQSIGEPGTQL
TMRTFHQGGVGGDITGGLPRVQELFEARVPKNCAPIASVAGTVTLEDEGNFWTLTIHPDD
GSDVVVYEKLSKRQGLAQVRRPMESNPNAMIERSLREGDHVNVGDRLLRGAADPHDVLEV
LGRRGVEKHLIDEVQAVYRTQGVSIHDKHIEIIIRQMLRRGTVIDSGTTEFLPGTLVDLS
EARQVNAAAVADGGEPAEMRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDQ
LIGLKENVIIGKLIPAGTGISRYRNITVKPTEAARSAAYSIPSFGDGIYGDEAYGDYTGA
SVPLEEYGYDQI
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgacgtaaacctcttcgacgagcttcgcatcggcctggctactgctgacgacatc
cgtcgttggtcgcatggtgaggtcaagaagcccgaaacgattaactaccgcacgttgaag
ccggaaaaggacggcctgttctgcgagcgcatcttcggtcctacccgtgactgggagtgt
gcgtgtggcaagtacaagcgtgtccgctacaagggcatcatttgtgagcgttgtggcgtc
gaggtcactaagtcgaaggttcgccgtgagcgcatgggccacattgagctggccgcgccg
gtgacccacatttggtacttcaagggcgtcccgtcgcgcctcggctacctgctggatctt
gctccgaaggatctggagcgcatcatttacttcgccgcaaacatcatcaccagtgttgat
gaggaggcgcgtcacaacgacatgtcgacgctcgaggcggagatgctgctcgagaagaag
gaagtcgagcaggacgcgaatgccgagattgcggagcgtgcgcagaagctggaggaggac
ctcgctgagctcgaggctgccggtgcgactgctgctgcccgcaagaaggtgcagaacgct
gctgacaaggagatgcagcacatccgcgaggccggcgagcgcgaggtcgagcgcctcgac
gaaatttggtccaccttccagaagcttgctccgaagcagatgattatcgacgagttcctc
tacgaagagctcgtggaccgctacgaggactatttcaccggcggcatgggcgctgaggcg
atccagacgctgatccgcaacttcgacctcgaagctgaggcggaggaactgcgcaccatc
atcgctgagggcaagggccagaagaaggtccgcgcactgaagcgcctgaaggttgtggct
gcgttccagcgttccggcaacgatcctgccggcatgatcctggacgcgatcccggtgatc
ccaccagagctgcgtccaatggtgcagctcgacggtggccgtttcgccacctcggacctg
aatgacctgtaccgtcgcgtaattaaccgcaacaaccgtttgaagcgcatgattgacctg
ggagccccagagatcatcgtgaacaacgagaagcgcatgctgcaagagtctgtcgacgcc
ctcttcgacaacggccgtcgtggtcgccctgtcacgggcccaggcaaccgtccgctgaag
tccctgtctgacctgctgaagggtaagcagggtcgcttccgccagaacctgctgggtaag
cgtgtggactactctggccgttcggtcattattgttggtccgcagctgaagatgcacgag
tgtggtctgccgaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcgcctc
gtggacaatgagtacgcgcagaacattaagtcggcgaagcgcatggtggagcgccagcgc
cctgaggtgtgggacgtcctcgaagaggcgatttccgagcacccggtgctgctgaaccgt
gcgccaaccctgcaccgtcttggcattcaggcgttcgagccgaagctggtcgagggtaaa
gcaatccagctgcacccgctggcctgtgaggcgttcaacgctgacttcgacggtgaccag
atggcagtccacctgccactgtccgcggaggcgcaggcagaggctcgcatcctgatgctg
tcctcgaacaacatcctgtccccggcatccggcaagccactggcgatgcctcgcctggac
atggtgaccggcctgtacttcctgaccatggaaaagggcgaggacgagatcggcggcgag
ggtcgtttcaccccatccgacgagaacggcccagccaagggcgtgtactcctcctaccgt
gaggccatcatggcctacgacctgggcgtacttggcctgcaggcaccgatcaaggtgcgc
atcgaccacctgcgtccgacgattgagattgaggctgagcagttcccagacggctggtcg
aagggccaggcttggatgatggagaccacccttggtcgcatcatgttcaacgagctgctt
ccgttcaacttcccgtaccaggaaggcgcgatggtccgtaagggcggcggcgctggcaag
gtgctgttgggcgacatcatccagtcgatggtggagaagtacccaatgattaccgttgcc
cagacgctggacaagctgaaggacgccggtttctactgggcgacccgttccggcgtgacc
atctccatgtccgacgtgttggtgcttccgaacaagacggaaatccttgagcagtacgag
cagcgcgccgaagagatcgagcgcaagtactgggagaagggtgccctgaccgaggagaac
cgctacgaccgtctcgtggagctgtggcaggacgccacgaaccaggtcggtgaagcagtt
gaggcgctgtacccggatgacaacccgattccgatgatcgtgaagtctggcgctgccggt
aacatgcgtcagatctggaccctggccggcatgaagggcatggtcgtgaactcgcgcggt
gagtacatcacccgcccgatcaagacctccttccgcgaaggcctgacagtgatggagtac
ttcaacaactcccacggttcccgaaagggcctggcggatacggcactgcgtaccgcagac
tccggctacctgacccgccgtcttgtcgacgtcgcccaggacgtcatcgtccgcgagcac
gactgcggcacccgccagggagtcaaggttccagttgcgcagcttgccggtgagaagttc
gtccgcgacgagttcgtcgagacctccgtcgctggccgagtactggcatccgacgcgaag
gacgccgagggcaacgttgtgctcgaagccgacgctgagctttcggaagagcgtatcgac
gccctcgtcgccgccggtgtcgaggaagtcaaggtccgctccgtcctgacctgccagacc
ccaaccggcgtctgcgcgaagtgctacggcaagtccatggcatccggcaagcttgtcgac
atcggtgaagccgtcggtatcgtggctgcacagtcgattggtgagcctggtacccagctg
accatgcgtaccttccaccagggtggtgtcggtggcgacattaccggtggtctgccacgt
gttcaggagctgttcgaggcccgcgtgccgaagaactgcgccccgatcgcatccgtggcc
ggcaccgtcaccctcgaagacgaaggcaacttctggacgctcaccatccacccggatgac
ggctccgacgttgtggtctacgagaagctgtcgaagcgccagggcctcgcacaggtccgc
cgcccgatggagtccaacccgaacgcgatgatcgagcgctccctacgtgaaggcgaccac
gtcaacgtgggcgaccgcctcctgcgcggcgctgctgacccgcacgacgtgctcgaggtt
ctcggccgccgtggtgtggagaagcacctcatcgacgaagtgcaggccgtgtaccgcacc
cagggtgtgtccatccacgacaagcacatcgagatcatcatccgccagatgctgcgacgc
ggcaccgtcatcgactcgggtaccaccgagttcctgccgggtacgcttgtggatctgtcg
gaggcacgccaggtcaacgctgcagctgttgcagatggtggcgagccagcagagatgcgc
tccgagatcatgggtatcaccaaggcctccctggcaaccgagtcctggctgtccgccgcc
tcgttccaggagaccacgcgtgtgctcacggacgctgctatcaacaagcgttctgaccag
ctgatcggtctgaaggagaacgtgatcatcggtaagttgatcccggctggtaccggtatc
tcgcgctaccgcaacatcacggtcaagccgacggaagccgcccgctccgccgcctactcg
atcccgtccttcggcgacggcatctacggcgacgaggcatacggcgactacaccggcgcc
tccgtcccactggaggaatacgggtacgaccagatctag
DBGET
integrated database retrieval system
