Corynebacterium sp. SCR221107: PAB09_05580
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Entry
PAB09_05580 CDS
T11128
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cors Corynebacterium sp. SCR221107
Pathway
cors03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cors00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAB09_05580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cors03019
]
PAB09_05580
03009 Ribosome biogenesis [BR:
cors03009
]
PAB09_05580
Enzymes [BR:
cors01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAB09_05580
Messenger RNA biogenesis [BR:
cors03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PAB09_05580
Ribosome biogenesis [BR:
cors03009
]
Prokaryotic type
rRNA helicases
PAB09_05580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
WBT09764
LinkDB
All DBs
Position
1244540..1246693
Genome browser
AA seq
717 aa
AA seq
DB search
MSITDDATSGENELDVNNVSESQENSQVDNGPMSVEDVLGDVDDSRVANTSEATGSAEDA
DNDVENVEMGDSESDSSNEEAQGESTNENQGPSFDNLGLPAEVLKAVAKVGFETPSPIQA
QTIPVLMEGHDVLGLAQTGTGKTAAFALPILSRIDRSVRHPQALVLAPTRELALQVADSF
QSFADHLGDIHILPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISELRFLV
LDEADEMLNMGFQEDVERILEDTPEDKQVALFSATMPNGIRRISRDYMKDPHEIQVKSET
RTNTNITQRYLNVAHRNKLDALTRILEVTEFEAMIMFVRTKHETEELAEKLRARGFSAAA
INGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIG
RTGRAGRSGEAILFVTPRERRMLRSIERATNATLVEMDLPTVDEVNESRKAKFADSITES
LEDSQIDVFRSLVKQYSEEHDVPLEDIAAALATQARAGDEFLMKEPPPEKRRERRERFDR
DDRRGGRDRGDRSDRGDRFDRGDRGGRFERSDKDMTTYRLAVGKRQHVRPGAIVGALANE
GGLNHKDFGRITIAVDHTLVELPSDLPKSVFDNLRDTRISGQLIHLEKDSGAPRGGRGGY
RDREDRGARGYRGGDREERRGGYRDRDDRRGGRGGYRDRDDRRGRADRERGERGWRD
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgagtattaccgatgacgccaccagcggcgagaacgagctggacgtgaataatgtgtcg
gaatctcaggaaaattcgcaggtagacaatggtccaatgtccgttgaggacgttttgggc
gatgtagacgactccagggttgcgaacacttctgaggccaccggctccgctgaagacgcg
gacaatgatgttgaaaatgtagagatgggtgactcagaaagtgactcctcaaacgaggag
gcccagggcgagtcgacaaatgagaatcagggaccaagtttcgataacttggggttgccc
gcagaggttctgaaggccgttgcgaaggtggggtttgaaaccccgtcgccgattcaggcg
cagaccatccccgtgctgatggaaggccatgacgtattgggtctggcccagaccggtacc
ggtaagacggctgcgtttgcgctgccgatcctgtcgcggattgaccgctccgtgcgtcac
ccgcaggcactggtgctggcaccgacccgtgagctggcactgcaggttgcagactccttc
cagtccttcgccgatcacctcggcgacattcacattctgccgatctacggcggtcaggca
tacggcatccagctgtccggcttgcgccgcggcgcgcagatcatcgtgggcaccccaggt
cgcgtcatcgaccacctggaaaagggctcgctggacatctccgagctgcgcttcctcgtg
cttgacgaggctgacgagatgctcaacatgggcttccaagaagatgtcgagcgcatcctc
gaggacaccccagaagacaagcaggttgcgctgttctccgcgacaatgccgaacggcatt
cgccgcatctctcgtgactacatgaaggatccgcacgagatccaggtcaagagtgagacc
cgcaccaacacgaacatcacccagcgctacctcaacgttgctcaccgcaacaagctcgat
gcgctgacccgaatcctcgaagtcaccgagttcgaggcaatgatcatgttcgtgcgcacc
aagcacgagaccgaggagctggccgaaaagctgcgcgcccgtggcttctccgccgctgcc
atcaacggcgatatcgcccaggcgcagcgcgagcgcaccgtggatcagctcaaggacggt
cgcttggacatcctggttgccaccgacgtcgcggcccgcggcctcgacgttgagcgcatc
acccacgtgttcaactacgacatcccgaacgacaccgagtcctacgtccaccgcattggt
cgcaccggccgcgccggacgttcgggtgaggcgattttgttcgtgaccccgcgcgagcgt
cgcatgctgcgctccatcgagcgggctaccaacgccacgctggtggagatggacctgcct
accgtggacgaggtcaatgagtcccgcaaggccaagttcgcggactccatcacggagtcg
ctggaggattcgcagatcgacgtcttccgctcgctggtcaagcagtactccgaggagcac
gacgtgccgctcgaggacatcgcagctgcgctggctacccaggctcgcgccggcgacgag
ttcctcatgaaggagccgccgccagagaagcgtcgcgagcgccgtgaacgcttcgatcgc
gatgaccgccgtggtggtcgcgatcgcggggaccgctccgatcgtggtgatcgcttcgac
cgtggcgatcgtggcggacgctttgagcgttccgacaaggacatgaccacctaccgcctg
gcagtgggcaagcgtcagcacgtgcgcccaggtgccatcgtcggtgcgttggctaatgag
ggcgggctcaaccacaaggacttcggccgcatcaccatcgccgtggatcacaccctggtg
gagctgccttctgacttgccgaagtccgtcttcgacaacctgcgcgatacccgcatttcc
ggacagctcatccacctggaaaaggactccggcgcaccgcgcggaggccgtggtggctac
cgcgaccgtgaagaccgcggcgcccgcggttaccgtggtggcgatcgcgaggagcgtcgt
ggcggttaccgcgaccgtgacgatcgccgcggtggccgtggtggctaccgcgaccgcgat
gatcgccgcggccgcgccgatcgtgaacgtggcgagcgtggctggcgcgactag
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