Corynebacterium sp. SCR221107: PAB09_07965
Help
Entry
PAB09_07965 CDS
T11128
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cors Corynebacterium sp. SCR221107
Brite
KEGG Orthology (KO) [BR:
cors00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cors03019
]
PAB09_07965 (hrpA)
Enzymes [BR:
cors01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PAB09_07965 (hrpA)
Messenger RNA biogenesis [BR:
cors03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PAB09_07965 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
WHD_HA2
nSTAND3
AAA_22
AAA_30
AAA_23
nSTAND_NTPase5
NACHT
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
WBT07850
LinkDB
All DBs
Position
1839287..1843177
Genome browser
AA seq
1296 aa
AA seq
DB search
MAARRADLEKSLDNVSITNAQGFHRRLRKAASLRALDAIALDVDKAARAVEERKAHIPEI
TFPDNLPVSERVDDIARAIMDNQVVIIAGETGSGKTTQIPKICLSIGRGIRGRIGHTQPR
RLAARTVAERIAFETETQIGDLVGYAIRFDDVVSERTAVKIMTDGILLAEMQRDHYLNAY
DTIIIDEAHERSLNIDFLLGYLKQLLPHRPDLKVIITSATIDPERFAKHFADAEGNPAPV
IEVSGRTYPVEILYRPLEAHVGEKTVDIDPVDGLIGALEELMEYGPGDILCFFAGEADIR
EAREAIDGQKWRGVEVVPLYGRLSNEEQHKVFRPHAGRRIVLATNIAETSLTVPGIHFVI
DTGTARISRYSLKNKVQRLPIEPISKASANQRSGRCGRVADGIAIRLYSEDDFLARPDFT
DPEILRTNLASVILQMASLRLGDIDEFPFIEKPDTRSIRDGLLLLHELGALANATSEGGT
PKLTSVGKTLARIPVDPRMARMLIEGHKLGCLDAVNVIVAALSIQDVRERPTEKQAQADS
AHARFRDKNSDFLTYLNLWNYLAEERAALTGNAFKKKIQSEFLHYMRIREWWDLVRQLRN
IEDQIGWDAPRDDVTHPDDDLVHQALLAGLLSHIGIRISDSREFQGARNTKFAIFPGSAL
AKKPPQYLMASELVETSRLWARDVASIQPRWVENLAGDLLKYQYTEPHWSSKHTNAMCYQ
RATLYGVPVIADRLVPFARLHPDQAREMFIRHALVEGEWTTHHEFFHANSAKLEDAQAVE
AKARRRDLIVDDEALFGFYSRRIPKDVVSGATFDKWWKKTRKSQPDLLDFDPEKLLQDAA
EEITEEQFPDTWRQGSVELNLSYVFEPSAVDDGVTMEVPIPLLGGLSSEGCEWLVPGMRV
ELVTELIRSLPKHIRRLVVPAPNFAEKITPDLHPERGELYVQLAARLQEITRVSVDHTDF
DLEKIPAHLKMRYAAVDRKGKIVDADRDLESLKRRRANQIKSSVSRVNRRIEQEESSTWT
RDTLGEIKEDINTTVDGHKVKAYPALVATANGFAVKAMPTKQEADAAILAANLTMLLREI
QVNTQKSLNGLPLKQRVAVENYPHGGPNGLINDIRTAAIRDLMMEHGGPVRSPEAFQTLL
ATIRPMVPGRVRQIVVGLAPGLVSYFDVQSKLQGWTGDAIEDLRRQLDFLLPEHAVAKYG
LPRLKHLPRYLQAMSIRLEEMDRNPSKDQQRQDIVNNLEAQLAQAMKAKPHNSVRVSDIR
DIQWMIQELRVSLFAQRLGTAQSVSERKIAKAIQAL
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
gtggcagcacgccgagcagacctcgaaaagtcgcttgacaatgtgagcattaccaacgcc
cagggctttcaccgcaggcttcgcaaggcggcatcgttgcgagcactcgatgcgattgcc
ttagatgttgacaaggcggcgcgcgcggtggaggaaagaaaagcgcatattccggagatc
acgttccccgacaacctgcccgtttccgagcgggtcgatgatatcgcccgcgccatcatg
gacaaccaggttgtcattatcgccggcgagaccggctccggaaagaccacccagattccg
aagatctgcctgtccatcggacgaggcattcgcggccgaattggacatacccaaccccgc
cgtctggctgcccgcaccgtcgcagaacgcatcgcttttgagacggaaacgcagatcggt
gatctcgttggctacgccattcgattcgatgacgtcgtctccgaacgcaccgccgtcaag
atcatgaccgacggcatcctgctggccgaaatgcagcgcgatcactatctcaatgcctac
gacaccatcatcatcgacgaggcccacgagcgcagcctcaacatcgatttccttctgggc
tacctcaaacaactactgccgcaccgaccggatctgaaggtgatcatcacctcggcaacc
atcgacccagagcgctttgccaaacatttcgccgacgccgaaggaaacccggccccagtc
atcgaagtctcggggcgcacctatccggtggaaatcttgtaccgcccactggaggcacac
gttggcgaaaaaaccgtcgatatcgaccccgttgacggactcatcggcgcgctagaagaa
ctcatggagtacgggccgggcgatatcctttgcttctttgcaggcgaggctgacatccgg
gaggctcgcgaagctatcgatgggcagaagtggcgcggcgttgaggtcgtgcccttatat
ggacgactatcaaacgaagaacagcacaaggtctttcgccctcacgctggccgacgcatc
gtgctggccaccaatatcgcggaaacctcccttacggttccaggcatccatttcgtcatc
gacaccggaacggcacgtatttctcggtattcgctaaaaaacaaggtccaacgcctgccc
atcgagccaatttccaaggccagtgccaaccagcgctcaggacgatgtgggcgcgtcgcc
gacggaatcgccatccgtttgtattctgaggacgattttttagcccggcccgacttcacc
gatcctgagatcttgcgtaccaacctagcgagtgtcatcctccagatggcaagccttcgg
ctaggtgatatcgatgagtttcctttcatcgaaaaacccgacacccgttctatccgcgac
ggcctgctcttgctgcacgagctcggcgccttagccaatgccacctcagaagggggcacc
cctaaactgacctctgtaggcaaaaccttggcccgcattccagtcgatccgcggatggca
cgcatgctcattgaagggcacaaacttggttgcttggatgccgtcaacgtgatcgttgcc
gccttgtcgattcaagacgtccgcgagcgcccgaccgagaaacaagcacaggcagactct
gcccacgctcgattccgggacaagaattcagacttcctcacctacctcaacctctggaac
tatcttgccgaggaacgcgccgcgctgacaggcaacgctttcaagaagaagatccaatcg
gaattcctccactacatgcgcattcgcgaatggtgggatctcgtgcgccagttgcgcaat
atagaggaccagatcggctgggacgctcccagagacgatgtaacccaccccgatgacgac
ctcgtccatcaggccttgttggcaggcctgctctcacacatcgggatccgcatcagcgac
tcccgcgagtttcaaggagcacgcaacacaaagttcgccatcttccccggctcagccctt
gccaagaaaccaccgcagtacctgatggcctccgaactcgtggaaacctctcggctgtgg
gctcgcgacgtggcctccatccaaccacgttgggtggagaacctagccggtgacctccta
aaataccagtatacggagccacactggtcctccaaacacaccaatgctatgtgctaccag
cgcgcaacgctctacggtgtcccggtgatcgcggatcgcctcgtccccttcgcgcgcctg
catccagatcaggcacgcgagatgtttattcgccatgccctcgtcgaaggcgaatggacg
acgcaccatgaattcttccacgccaattccgccaagctagaagacgcccaagcagtcgag
gccaaggcgcgccgccgcgatctcatcgtcgatgacgaggcgctttttggcttctactca
cgtcgcatccccaaagacgtggtgtcaggtgcgacctttgataagtggtggaaaaagacc
cgaaagtcgcaaccggatctgctcgacttcgatccggagaaactgttgcaggatgcggca
gaggagattaccgaagagcaattcccagacacctggcgccagggaagcgtcgagttgaac
ctgagctatgtgtttgaaccaagtgctgtcgacgacggtgtcacaatggaagtgcccatt
cccctcttgggcggtctttcatctgaagggtgcgaatggctcgtgccaggaatgcgggtt
gaattagttaccgagctgatccgcagcctgcccaagcatattcgacgcctggtggtcccg
gcacccaatttcgccgaaaagatcactccggatctgcatcctgagcgcggtgaactctac
gtccaacttgcggcaagacttcaagagattactcgggtcagcgttgaccacaccgatttc
gatctggaaaagatcccagctcatctcaagatgcgctacgcagcggtggacaggaagggc
aaaattgtcgatgccgatcgcgacctcgagtcactcaaacgtcgccgcgccaaccagatc
aagtcctccgtttcccgagtcaaccggcgtatcgagcaggaagagtcttccacctggaca
cgcgacaccttgggcgaaatcaaggaggacatcaacaccaccgtcgatggtcacaaggtc
aaggcgtatcccgcgctcgtggccaccgccaacggttttgcggtcaaggcaatgcccact
aagcaggaagccgatgccgccattctcgctgccaacctcacgatgttgctgcgagaaatc
caggtcaatacgcaaaagtccctcaatggactgccgctgaaacaacgggtagcggtggag
aattatccacacggtggtcccaatggtctcatcaacgacattcgcacggcagcaattcgt
gacctcatgatggaacacggtggccccgttcgttccccggaagccttccagacactactg
gccacgattcgtcccatggtccccggtcgggtacgtcagatcgtggttggtctcgcccca
gggctcgtgtcctacttcgatgtgcaaagcaagcttcaaggctggactggtgacgccatc
gaggatcttcggcgtcagttggatttcttgcttcccgaacatgctgtagccaagtacgga
cttccccgactcaagcacttgccccgctaccttcaagcgatgagcatccggctcgaggaa
atggaccggaatccaagcaaggaccaacagcggcaagatattgtcaacaaccttgaggct
cagcttgcccaggcaatgaaggctaagccccacaactccgttcgggtcagcgacatccgc
gacatccagtggatgatccaagagcttcgggtaagccttttcgcccagcgtctcggcacg
gcccaaagcgtgtccgagcgaaagattgccaaggcgatccaagcgctatag
DBGET
integrated database retrieval system
