Corynebacterium sp. SCR221107: PAB09_08130
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Entry
PAB09_08130 CDS
T11128
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cors Corynebacterium sp. SCR221107
Pathway
cors03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cors00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAB09_08130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cors03019
]
PAB09_08130
Messenger RNA biogenesis [BR:
cors03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PAB09_08130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WBT07878
LinkDB
All DBs
Position
complement(1882274..1884313)
Genome browser
AA seq
679 aa
AA seq
DB search
MTEPRSRSRKVTRKAGPPEANEAPVFQAPEVTDAGAAEHKPEGNANKGGGRGRNTNKRSS
NRSRRGGNDASRTDSNGNRNERGGRGRERRNVVKSMQGADLTERLPQPPKAPKNGLRIYA
LGGISEIGRNMTVFEYNNRLLIVDCGVLFPSSGEPGVDLILPDFGPIENQLDRVEALVVT
HGHEDHIGAIPWLLKLRPDIPIIASKFTLALIAAKCREHRQRPKLIEVNEQSVENRGPFN
IRFWAVNHSIPDCLGVAIKTGAGLVVHTGDIKLDQTPPDGRPTDLPALSRFGDEGVDLLL
CDSTNATTPGVSGSEAEIAPTLKRLVADAKQRVILASFASNVYRVQAAVDAAVAAGRKVA
FNGRSMIRNMEIAEKLGYLKAPRGTIVTMDDAAKMAPHKVMLITTGTQGEPMAALSRMAR
REHRQITVRDGDLIILSSSLVPGNEEAVFGVINMLAQIGATVVTGRDAKVHTSGHGYSGE
LLFLYNAARPVNAMPVHGEWRHLRANKELAISTGVERDRVVLAQNGVVVDLVDGRARVVG
QIPVGNLYVDGVTMGDIDAEVLEERTSLGEGGLIAITAVIDNRTGRLLERPTVQAKGFSE
DAVAMMPEVTDLVESTMNDLAAEGENDPYRMVQHLRRKVSRYVEQTWRRQPMIMPTVIPT
TTAQVTADDDEIRATRESL
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaccccgtagccgctctcgaaaggtgacccgtaaggctgggccgccggaggct
aacgaagcgcctgtattccaggcaccggaagtaactgacgcgggtgctgcagagcacaag
cccgagggaaatgccaacaagggcggcggccgaggacgtaacaccaataagcgttcgagc
aacaggtctcgtcgcggcggcaatgatgcttcgcgcaccgattcaaacggcaatcgcaac
gagcgtggcggtcgcggtcgcgagcgccgcaatgtggtcaagtccatgcagggcgccgat
ctcaccgagcgtcttccgcagccacccaaggccccgaagaacggccttcgcatctacgcg
cttggtggcatttccgaaatcggccgtaacatgacggtctttgagtacaataaccgcctg
ctcatcgttgactgtggcgtgctgtttccctcctccggcgagcctggcgtggacttgatc
ctgcccgatttcggaccgattgaaaaccaactcgatcgcgtcgaggctctcgttgtcacg
cacggtcacgaggaccacatcggcgctatcccttggctattgaagctgcgccctgacatt
ccgatcatcgcctccaagttcaccttggcactgattgctgctaagtgtcgggagcaccgc
cagcggccaaagctcatcgaggtcaatgagcagtccgtggaaaaccgcggtcctttcaac
attcgcttctgggctgtcaaccactcaattccggattgcttgggcgttgccatcaagacg
ggagcgggtctggtcgttcacaccggcgatatcaagctggatcagaccccgccggatggg
cgtccgaccgacttgccagcgctttctcgcttcggcgacgagggtgtggatctccttttg
tgcgattccacgaacgcaaccacccctggcgtttccggctccgaggcggaaattgctccc
accttgaagcgtttggtcgcagatgccaagcagcgcgtgatccttgcttccttcgcctct
aacgtgtaccgcgtgcaggctgctgtggatgctgccgtggccgctggccgcaaggttgcc
ttcaatggtcgttcgatgatccgaaacatggagatcgccgagaagctcggttacctcaag
gcgccacgcggcacaattgtcacgatggatgacgctgccaagatggccccccacaaggtc
atgctgatcaccaccggtacccagggcgagccgatggcagcgctttcgcgcatggcgcgt
cgcgagcaccgtcagatcactgtccgtgatggtgacctcatcatcttgtcctcctcgctg
gttcccggaaacgaggaagcggtgttcggtgtgatcaatatgctggcccaaatcggtgcc
accgtggtcactggccgcgatgccaaggtccacacttccggccacggctactccggcgag
ctgttgttcctctataacgccgcacgcccggtcaacgcgatgccggtgcacggcgaatgg
cgccacctgcgcgcgaataaggaactggcgatttccaccggcgtggaacgcgaccgtgtg
gtgctggctcaaaacggcgttgtcgtcgacctcgtcgatggtcgcgcccgcgttgtaggc
caaatcccagtcggtaacctctacgtcgacggtgtcaccatgggcgacatcgacgccgag
gtactcgaggagcgaacgtcgctgggcgagggtggtctcatcgccatcaccgcggtcatc
gacaaccgcaccggccgcctgctggagcgcccaaccgtccaagcaaagggcttctccgag
gatgctgtcgccatgatgccggaagtcaccgacctggtggagtccaccatgaatgatctg
gctgcggagggcgaaaacgatccttatcgcatggtccagcaccttcgtcgcaaggtttct
cgctatgttgagcagacttggcgtcgtcagccgatgattatgccgacggtcatcccgacc
accactgcgcaggtcaccgccgacgacgatgagatccgcgcaacccgcgaaagcctctaa
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