Chryseobacterium oryzae: MTP08_03215
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Entry
MTP08_03215 CDS
T08538
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
corz
Chryseobacterium oryzae
Pathway
corz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
corz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTP08_03215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
corz03019
]
MTP08_03215
03400 DNA repair and recombination proteins [BR:
corz03400
]
MTP08_03215
Enzymes [BR:
corz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MTP08_03215
Messenger RNA biogenesis [BR:
corz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTP08_03215
DNA repair and recombination proteins [BR:
corz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MTP08_03215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
BrxL_ATPase
DUF7022
OHA
Motif
Other DBs
NCBI-ProteinID:
UOE38799
UniProt:
A0ABY4BIR4
LinkDB
All DBs
Position
complement(695646..697547)
Genome browser
AA seq
633 aa
AA seq
DB search
MISSQDFNELKNKTLKHFWGYDYFRESQEQIIDSIIQRKDTLVLLPTGAGKSLCYQLPAL
LQQGTCLVISPLLALMKDQVNQLKFRGIEAEYLSSELDEFDAEVIYNRCKDGLTKLLYIS
PERITNKQFLQNIAEIELSFIAVDEAHCISEWGQDFRPSYQNIKDFRKNNPEIPCLALTA
TATAKVLEEIKNKLDLQKPIVFQKSFRRDNIKIFSEEISDKYLKVFHILQYAKESGIIYV
RTRKEAELLTEYLHRNKMQNVDFYHAGLTTKEKHEKQNFWNNSDKNILISTNAFGMGIDK
DNVRFVIHFSPSQSIENYYQEIGRAGRDGKKSFAFMLWNKQEISNFDQILKNQIPNKAEF
LKIISYLYSKFQVAEFELPEKVFQLNTSGIQNFTKLSTAKIKNVLNFLHTQEIIFYNNNK
SLSSVELLMNADEIDQLPAKDAYFIELLLRSISGITTHKVMFSEQNVSNKIGVSIPLLKE
RLKEMQHKNYLEYIDGALASVKFLKPRDERANSGIYWKLFEHIQKNKIQKWEEMKFFVED
SQYCKMKLILSYFGEKNTKNCGQCTVCEKNKRTLFGKDISDDIVKVLSKKASTIEEISVQ
LQFQAKEKILEHLIYLLDSGKVKMLNFRTYSLT
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgatttcttctcaggattttaatgaactaaaaaataaaaccctaaaacacttttggggt
tacgattattttcgtgaaagtcaggaacaaattatagattcaatcattcagagaaaagac
actttagtcttattgccaaccggagcgggaaaatctctctgctatcagttacctgcactt
ttacagcagggaacctgcctagttatctcgcccttacttgcattaatgaaagatcaggta
aaccagttaaaatttagaggaattgaagctgaatatcttagctcagaattagatgaattt
gatgctgaagtaatctataaccgatgcaaagacggactaactaaactactgtacatttct
ccggaaagaattaccaataaacagtttttacaaaatattgctgaaatagaactttcattt
attgcagtagatgaagcacattgtatttcagaatgggggcaagatttcagaccaagctat
caaaacatcaaagatttcagaaaaaacaatcctgaaattccttgtttagccttaacggca
acggcaacggcaaaagttttggaagagataaaaaataaactggatctccaaaaaccaatt
gttttccagaaaagctttagaagagataacattaaaattttctctgaagaaatatcagac
aaatacctcaaagttttccatattctgcagtatgccaaagaatccggaattatatacgtg
agaacgagaaaagaagcagaattgcttacagaataccttcatcgtaataagatgcagaat
gtagatttctatcatgccggtcttacaacaaaagaaaaacacgaaaaacaaaacttctgg
aacaatagcgataaaaatattttaatttccaccaatgcattcggaatggggattgataaa
gataatgtccgctttgtcattcatttttcgccctcacaatctatagagaactactatcag
gaaattggaagagcaggaagagacggaaaaaaaagttttgcttttatgctttggaataag
caggaaataagcaatttcgatcagattttaaaaaatcagattcccaacaaagcagaattt
ttaaaaattataagctatttatattctaaatttcaagttgctgaatttgaacttccggaa
aaggtatttcagctcaacacttcaggaatacagaatttcacaaaactttctacagcaaaa
attaaaaatgttttgaattttcttcatacacaggaaattattttttacaataacaacaaa
agtctttcctctgtagaacttctgatgaatgcagatgaaatagatcagctccctgcaaaa
gatgcttattttattgaattacttttacgctccatttctggcataactacccataaagtg
atgttcagcgagcagaatgtgagcaataaaattggagtaagtattcctttacttaaagaa
agattaaaggaaatgcagcataaaaactatcttgaatatattgatggtgcattggcgagc
gtaaaatttctaaaaccgagggacgaaagagccaatagcggaatttattggaaacttttt
gaacacatccaaaaaaataagatacaaaaatgggaagagatgaaattttttgtagaagac
agccaatattgcaaaatgaagcttattttatcttattttggagaaaaaaatacaaaaaac
tgcggacaatgtactgtttgtgagaaaaataaacgaacactattcggtaaagatatttct
gacgatattgtaaaagttttaagtaaaaaagcatctactattgaagaaatttctgttcag
cttcaatttcaggcaaaagaaaaaatattagaacaccttatttatcttttagattctgga
aaagtaaaaatgctgaatttcagaacttattctttaacttaa
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