Chryseobacterium oryzae: MTP08_04060
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Entry
MTP08_04060 CDS
T08538
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
corz
Chryseobacterium oryzae
Pathway
corz03030
DNA replication
corz03410
Base excision repair
corz03420
Nucleotide excision repair
corz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
corz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MTP08_04060 (polA)
03410 Base excision repair
MTP08_04060 (polA)
03420 Nucleotide excision repair
MTP08_04060 (polA)
03440 Homologous recombination
MTP08_04060 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
corz03032
]
MTP08_04060 (polA)
03400 DNA repair and recombination proteins [BR:
corz03400
]
MTP08_04060 (polA)
Enzymes [BR:
corz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MTP08_04060 (polA)
DNA replication proteins [BR:
corz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MTP08_04060 (polA)
DNA repair and recombination proteins [BR:
corz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
MTP08_04060 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MTP08_04060 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
DUF2202
RNase_H_2
HHH_2
ACS_CODH_B_C
DUF7397
Motif
Other DBs
NCBI-ProteinID:
UOE38956
LinkDB
All DBs
Position
875623..878469
Genome browser
AA seq
948 aa
AA seq
DB search
MEATQDKRLFLIDAYAMIFRGYYALIRSPRITSTGIDTSAIFGFTNSLIELIRRERPTHL
AVVFDVGQASVRTNDYTEYKANRSETPEAITTAIPYIKRILEAMHIPHLGVEGYEADDVI
GTIACKAEKEGYTTFMVTPDKDFAQLVTDKIKIYKPGLKGSDIEILGVDEVKAKYEIEDP
KQVIDFLAMMGDAVDNIPGLDGVGEKTAMKFLKEFGSIENLLANTDQLKGKLKEKVEASA
ERGILSKKLATIICDAPIEFHQEQYDLETPDFDKVKEIFDEIEFRRLYENLYRAFAPSET
LSVKSAQISEVEIQITETPQQKVAKNVGQLDLFATYEELDQATSTKTTIEQNDHLYQFVD
NPKAQKILVENLLRQKAVCFDTETTSLNEMEAELVGMSFSYQKGLAYYVPFSEDQAEVLQ
TLEIFRPFFEKEDLIKIAHNLKYDYKVLQKYNITVKGAMFDTMIAHYLLNPDGRHGMDYL
SEVYLHYKPVSIETIIGKKGKKQGNFRDADLRTQTDYAAEDADVTFQLYELFAPQLKKEN
LEDLFFKIEMPLMEVLAKMELAGISLDEKWLAQESIDLENDLRQLESTIFEISGEEFNMN
SPRQLGDILFEKMQLDPKAKKTKTGQYATSEDVLQKLASKNEIIQHILEYRTYQKLKSTY
VDALPSQIDKEDNRVHTNFSQTTAATGRLASVNPNLQNIPIRTLRGQQIRGAFVSGEGKK
IISADYSQIELRLIAEISGEENMIKAFQNGEDIHASTAAKLFKIPLEEVSKTQRSQAKTV
NFGIIYGQGAFALAEQTGLSRTEAKQMIEAYFETYPKLKAYMAEQVAKARELGYVETILG
RKRHLKDINSGNFVIRGHAERNAVNAPVQGSAADVVKMAMIKIDKELQEQNLQTKMLLQV
HDELLFEAPIEEVETAKNLIKKEMESAIETNVPLLVEVGVGNNWLEAH
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaacacaagataaaaggctttttcttattgatgcgtatgcaatgattttcaga
ggatattatgcactcatcagaagtcctagaattaccagtacagggattgatacatctgct
atttttggttttaccaattctttgatagagcttatccgaagagaaagaccaacccatttg
gctgtagtttttgatgtcggacaggcaagtgtgagaaccaatgactataccgaatacaaa
gccaatagaagcgaaactccagaagcaattacaacagcaattccttatataaaaaggatt
ttggaggcaatgcatatcccgcacttgggtgttgaaggctatgaagcggatgatgttatt
ggaactattgcatgcaaagcagaaaaagaaggttacactacttttatggtaactccggat
aaggattttgcccaattggttaccgataaaattaaaatatataaaccaggcttaaaaggt
agtgatatcgaaatattaggtgttgatgaagtaaaagcaaaatatgagattgaagatccg
aagcaggtcatcgattttctggcaatgatgggagatgcagtagataatattcccggattg
gatggagtaggagagaaaacagctatgaaattccttaaagaattcggaagtatcgaaaat
cttttagccaatacagaccagttgaaaggtaagcttaaagaaaaagttgaagcttcggct
gaacgcggtattttatctaaaaaattagcaaccattatctgtgatgctccaattgaattc
catcaggaacaatacgatcttgaaactcccgatttcgataaagtgaaggagatttttgat
gaaattgaattcagaaggctttatgaaaatctttatcgtgcttttgctccatccgaaacg
ctgtcggtgaagagtgctcagatttcggaagttgaaattcagattacagaaactccacag
cagaaagttgccaaaaatgtaggacagctcgacctttttgctacttatgaagaactcgat
caggcaacttccacaaaaacaactattgagcaaaacgaccatttgtaccagttcgtagac
aatccgaaagctcagaaaattttagttgaaaatttactcagacaaaaagcggtgtgtttt
gataccgaaacgacttctttaaatgaaatggaagccgagcttgtgggaatgagcttttcc
taccaaaaaggtttggcgtattatgttccgttttctgaggatcaggctgaagttttgcag
actttggaaattttccgaccattttttgaaaaagaagatttaattaagattgctcacaac
ttaaaatacgattataaagttcttcaaaaatataatattaccgtaaaaggtgcaatgttc
gataccatgattgcacattatcttctaaatcccgacggaagacacggaatggattatctt
tctgaagtttatcttcattataaacccgtttccattgaaacaattattgggaaaaagggt
aaaaaacaaggtaactttagggatgcagatttaagaacccagaccgattacgctgcggaa
gatgcagatgttacttttcagttatacgaattgttcgcaccacagctcaaaaaagaaaat
ttagaagatttattttttaaaattgaaatgcctttaatggaagttttagctaaaatggaa
ttggcaggaatttccttagacgaaaaatggctggctcaggaaagtattgatctggaaaat
gatttaaggcagttagaatctaccatatttgaaatttccggtgaagaatttaatatgaat
tctccaagacagttgggcgatattctatttgaaaaaatgcagctggatccgaaagctaaa
aaaaccaaaaccggacagtatgctacttccgaagatgttctgcaaaaattagcttcaaaa
aacgaaattatacagcatattttagaatacagaacttatcagaagctgaaatctacttat
gttgatgctttgccatcccagattgataaagaggataacagagtacataccaatttttct
cagaccactgctgcaacggggcgtttggcgagtgtaaatcctaatttacagaatatccca
atccgtactttgagagggcagcaaattcgtggagcttttgtttcgggtgaaggtaaaaaa
attatttctgcagattattctcaaatagaactgcgtctaattgccgagatttcgggtgaa
gaaaatatgattaaagcctttcagaacggtgaagatattcacgcttctacagcggcaaaa
ttgtttaaaattccattagaagaagtttcaaaaacacagagaagtcaggcgaaaacggtt
aattttggaataatttacggtcagggtgcctttgctttggcagaacaaaccggtctttcg
agaaccgaggcaaaacaaatgattgaagcatattttgaaacttatccaaaactgaaagca
tatatggcagaacaggttgccaaagctagagagttggggtatgtagaaacgattttaggc
agaaagagacatttaaaagacattaattccggaaatttcgtgattcgaggtcatgccgaa
agaaatgcggtgaatgctcctgtacagggaagtgctgcagatgttgtaaaaatggcgatg
attaaaatagacaaagagcttcaggaacagaatcttcagaccaaaatgctgcttcaggtg
catgacgaattgttatttgaagcacctattgaagaagtagaaacggcgaaaaatcttatt
aaaaaagaaatggaatctgccattgaaaccaatgttccgttattggtagaggtgggtgta
ggaaataactggctagaagcacattaa
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