Chryseobacterium oryzae: MTP08_11505
Help
Entry
MTP08_11505 CDS
T08538
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
corz
Chryseobacterium oryzae
Pathway
corz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
corz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTP08_11505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
corz03019
]
MTP08_11505
03009 Ribosome biogenesis [BR:
corz03009
]
MTP08_11505
Enzymes [BR:
corz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MTP08_11505
Messenger RNA biogenesis [BR:
corz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTP08_11505
Ribosome biogenesis [BR:
corz03009
]
Prokaryotic type
rRNA helicases
MTP08_11505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UOE37675
UniProt:
A0ABY4BM82
LinkDB
All DBs
Position
complement(2535542..2537245)
Genome browser
AA seq
567 aa
AA seq
DB search
MNLFTETNLSPDLLKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQITKDIKNYSKYMQNIKTTAVYGGSSIMDQIRSLK
EKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKEELETIMRETPETKQT
FLFSATMSKEVERISKNYLTKPHRISVGSINEVKKNIKHEYYVAGYRQKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVVHYSLPDDPEVFVHRSGRTGRAGRDGISIALIKPEESRKLKQIKSV
TKIEINEGKIPTGEDIVKAQVAGVFESLFEEHQDFFEFDNSLIPDLSAFSKEELVHKLLQ
FQLKDLALYYKDRHDLIEQKLSSRDDDRGGRGDRRDRDRGRDRDRDRDRGGRDRGERRGG
KPRQRDENMTRFFFNLGKKDQLKKIDVLEIINKATSSKGNKRAEIGNIEILEKFSFFEVE
KSFKGELLGNISSMKFKGKEMRAEEAN
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaatttaagtcctgatttacttaaggcaattggcgaactg
ggttacgaaagcccgacagaaatccaaaaacagactatccctttcattctttcagatatt
cgcgatcttatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaacttttggtgctttgtccgaca
cgagaattatgtcttcagattaccaaagacatcaaaaattattctaagtacatgcagaac
atcaaaactacagcagtttatggtggaagcagtattatggatcagattcgttctttaaaa
gagaaaccacaaattattgtaggaactccgggaagagtaatcgatctaattaacagaaag
gctttagacttttcggctattcactggcttgttttagatgaggcagacgaaatgctttca
atgggtttcaaagaagaactggaaaccatcatgagagaaactcctgaaacgaaacagact
ttcttattctctgctacaatgagcaaagaagtagagagaatttctaaaaattatcttaca
aaacctcacagaatttcggtgggttctattaacgaagttaaaaagaacattaagcacgaa
tactatgttgcaggttaccgtcagaaaaaagaagctttaaaaagacttattgacgctaac
ccgaaccaatattccattattttctgcagaacaagaatggaaacacaggaggttgcagat
ttcttaatgcagaacggttatgcagcagatgctcttcatggtgatctttctcaggcacag
agagatacggtaatgaagaaattcagactgaaaaatattgatattcttgtggctacagat
gttgcagcaagaggtttagatgtagattctcttactcacgtagtacattattctttgccg
gatgatccggaggtgtttgttcacagaagtggtagaacaggtagagcgggaagagatgga
atttcgattgctttaattaagcctgaagaaagcagaaaactgaagcagataaaatctgta
acaaaaatagaaattaacgaaggtaaaatccctaccggagaagatattgtaaaagcacag
gttgcaggagtttttgaaagcctttttgaagagcaccaagatttctttgagttcgataat
tctttaatccctgatctttcggctttttctaaagaagaattagtacataaactacttcag
tttcaactaaaagatcttgctctttattataaagacagacacgatttaatagaacagaaa
ttgagcagcagagatgatgacagaggtggaagaggtgatagaagagatcgtgatagaggt
agagatcgagacagagaccgcgatagaggtggtagagaccgtggcgaaagaagaggtgga
aaaccaagacagcgtgacgaaaatatgaccagatttttcttcaatttaggtaagaaagat
cagttgaagaagatagatgttttagaaattattaataaggcaacttcaagcaaaggcaac
aagcgtgctgaaattggaaacatcgaaattctggaaaaattctcattctttgaagtagaa
aaatcattcaaaggagagcttttaggaaacatttcttccatgaaatttaaaggaaaggaa
atgagagccgaagaagctaactaa
DBGET
integrated database retrieval system
