Corynebacterium pseudotuberculosis 42/02-A: Cp4202_1214
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Entry
Cp4202_1214 CDS
T02053
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cos
Corynebacterium pseudotuberculosis 42/02-A
Brite
KEGG Orthology (KO) [BR:
cos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cos03019
]
Cp4202_1214 (hrpA)
Enzymes [BR:
cos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Cp4202_1214 (hrpA)
Messenger RNA biogenesis [BR:
cos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Cp4202_1214 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
ResIII
AAA_30
AAA_11
NACHT
HA2_N
SLFN-g3_helicase
PhoH
TsaE
AAA_16
ABC_tran
AAA_25
Tc-38
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AEP70468
LinkDB
All DBs
Position
1339607..1343605
Genome browser
AA seq
1332 aa
AA seq
DB search
MSTAKHQPHNKRDVESKAIPTTPEEQRSLANFSRTDTELRSTKESLRAQLSQVSIAEERV
FLRRILKASSKSAITAISADIQQAQIALSQKAALIPSITFPENLPVSSQRDAIAQAITNN
QVVIIAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRLAARTVAERIAEELDQKIGSS
VGYAIRFDDRVSASTSIKLMTDGILLAEMQRDRFLNAYDTIIIDEAHERSLNIDFILGYL
KQLLPRRPDLKVIITSATIDPERFAQHFANANGEPAPIIEVSGRTYPVEILYRPLEIPDG
EKLIDVDPIDGLIQAIQELMGYGPGDILCFFAGEADIREAMDAIEAKRWKNVEVTPLFGR
LSNQEQHRVFSPHSGRRIVLATNIAETSLTVPGIHFVVDTGTARISRYSTRTKGQRLPIE
PISQASANQRSGRCGRVTDGIAIRLYSQQDFESRPEFTDPEILRTNLASVILRMASLKLG
DIENFPFIQAPDTRAIRDGFLLLKELGALADSAKTNSPLLTTVGRTLAKIPLDPRLARML
IAAEEFGCLREAYIVVAALSIQDVRERPLEKQSQADQLHARFKDTSSDFLSYLKLWEYIS
EKRTELSGNAFRRTMQSEFLHYMRIREWSDLIRQLRSIGEQIGWTNPDDIAGHLIPDNLH
KALLAGLLSHIGLRDGDSKEFIGSRNSRFLVFPGSSLAKRPPQFLMAAELVETSRLWARN
VAEIDPAWVEHIGKNLLKHNYSEPYWSTKRVAAMVHQRSTLYGVPIIADRPVGYASIDPR
AARDMFIREALVNGNWTTHHKFYRRNAEKLLSAAQIEEKIRRRDVVIDEDALYNFYDSRL
PDHITTGRSFDRWWKTAVHKTPHLLDFDLEKLRRGESANVNEEDFLDIWRRGSLEFGLTY
HFDPSAEDDGVTVLVPVPLLGGLDADGFEWLVPGLLEDLVTELIRSLPKHLRKTVVPAPD
FAHKITTMLNYRDGFLYQRIAECLSELGRPGISADDFNPNTLPKHLKITFAAVDKRGRII
DRDKSLDSLKSRRSEQIRASVSRVSHAVEQSSAKEWTPQSLGTISQEVTTKVDGQLVTTY
PALVVTPEGISVKAMPTKREADISMFTATLTLLLKATPVNTQKMLNGLPLQQRVAIENYP
HGGATGFVNDAQVAVVRDLIIANGGAVRSPEEFSKLQTIIKPLVPSKVRAIVVELAPGIN
SYLRVKSEINNWTGPAIDDINNQLNFLLPPRAISQHGAHRLKHLPRYVQAITLRLEDMER
MPDRDADRQLLVNRLERGLAQKIQKSGQGKSAHQVRDIQWLIQELRVSLFAQRLGTTQSV
SERKIAKAIEQL
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgcgaaacatcagccccataataagagggacgttgagtcaaaggcgatccca
actactcctgaggagcaacggagcttggcaaacttctctcgaacagataccgagctacgc
tcaacaaaagaatctcttcgcgcacaacttagccaggtcagtatcgctgaggaacgagtc
ttccttcgtcgtattctcaaagcctcttctaagagcgcaatcacagctatctccgcagat
atccaacaggctcagatagcgttatcgcagaaagcagcgctcattccctctattactttt
cctgagaatctcccggtctccagccaacgcgacgctatcgcacaagccattaccaacaat
caggttgtgattattgctggagaaacaggatcaggaaaaaccacccagatacccaaaatc
tgtttagagctaggtcgcggggtacgtggattaatcggacatacgcaaccgcgtcgactc
gcggcacgcactgttgccgagcgtatagccgaagaacttgaccaaaaaatcggttcttca
gtggggtatgccatccgctttgatgaccgtgtttctgcttctacatccatcaagctgatg
actgacggcatcctgctcgcagaaatgcagcgggatcgattccttaacgcttatgacacg
ataattatcgacgaagcccatgagcgcagcctcaacatcgattttattcttggatacctc
aaacagcttcttccgcgccgtcctgatcttaaagtcatcattacttctgccacgattgac
ccagagcggtttgcgcagcactttgccaacgcaaacggtgaacctgcgcccattattgag
gtctccggacgtacgtaccctgttgaaatcctttatcgtccgcttgaaatccccgatggg
gaaaagcttatagacgtagatcccattgatgggctcatccaagccatccaagagcttatg
ggatatggtcccggcgatattctttgtttctttgctggcgaagcagatatccgcgaagcg
atggatgctatcgaagccaaacggtggaaaaacgtagaggtcacacccctctttgggcgt
ctctccaaccaagaacagcatcgagtcttttccccacattccgggcgccgaattgttttg
gctactaacatcgcggaaacctcgctgactgttccgggtattcattttgtcgtggacacc
ggaacagcccgtatttcaagatattccacccggaccaaaggccagcgtcttcctatcgag
cctatctctcaagcaagcgctaaccagagatcaggacgctgtggtcgtgttacagacggc
atagcaattaggttgtactcccagcaagactttgaatctcggccagaatttactgatcca
gagattttacgaacaaacttggccagcgtcattctccggatggcttccctcaaattggga
gacattgaaaattttccttttatacaagcacccgataccagagctatccgtgacggattt
ttactgctcaaggagctaggagcccttgcagattcagccaaaacaaactccccactcctc
actacagtcggccgtactctggccaagatacctttggaccctcgtttagctcgcatgctg
atcgcggcagaagaatttggttgtttaagagaagcctacatagtggtggctgcgctgagt
attcaggatgttcgcgagcgtccgctagaaaaacaaagtcaagctgatcagctccacgca
cgttttaaagacacaagcagcgattttcttagctaccttaaactttgggaatacatatca
gaaaaacgcaccgagctttctggtaatgcttttcgacgtaccatgcagtccgaattctta
cactacatgcgcattagggaatggtcagatcttattcgtcagttacgtagcatcggcgaa
caaattggatggaccaacccagatgacattgcaggtcatctcatcccagataacctgcac
aaagctctcctagccggactactgtctcacatcggtttaagagatggcgattctaaggaa
ttcataggaagcagaaactccaggtttttggtgtttcctggttcctcattggccaagcgt
cccccgcaattccttatggcggcagagcttgtggaaacttcacggttatgggcgcgtaat
gtagcggagatcgatccagcgtgggtcgaacatataggtaaaaatctgctcaagcacaat
tattctgagccgtattggtctacaaagcgcgtagcagccatggtgcaccaaagatctacg
ttatacggtgttccgattattgctgataggccagtcgggtatgcttccatcgatcctcgt
gctgctcgcgatatgtttattagagaagccctagtcaatggtaattggactactcatcat
aagttttatcgtcgtaacgcagaaaaactactctcagctgcgcaaattgaagaaaaaatc
cgacgtcgcgatgttgtaatcgatgaagatgctctctataacttctatgattccaggctc
ccagatcacatcactacaggacgttcctttgaccgctggtggaaaacagccgtccataaa
acgcctcatcttctagactttgatctggaaaaattgcgccgaggtgagtcagcaaacgtc
aatgaagaagacttcctcgatatttggcgccgaggttctttagaattcggcttaacctac
cactttgatcccagcgccgaagatgacggtgtcactgttcttgttccggtaccattactg
ggaggactcgatgcagacgggttcgaatggctagttcctggtttgttagaagatctggtt
actgagctgatccgttctttaccaaaacacctgcgtaaaaccgttgttcctgcaccagat
tttgcccataaaatcaccaccatgctgaattatcgcgatggtttcctctatcaacgcatc
gccgaatgtctatctgaattggggcgtcctggaatatctgcggatgattttaacccgaac
acactccctaaacacctcaaaataacattcgctgctgtagataaacgcggacgtatcatt
gatcgggacaaatcgctcgattccctcaaatcccgacgttctgaacaaatccgagcttca
gtttcacgagtgtcccatgccgtcgagcaatcctctgctaaagaatggacgcctcagtct
ctaggcactatctcacaagaagtgactacaaaggtcgatggacagctggttaccacgtat
ccagccctcgttgttaccccagagggtatttcggtcaaagccatgcccactaagcgtgag
gccgatatctctatgtttacggccacactaacgttgctgcttaaagcaacgcctgtaaat
actcagaagatgctcaatggcctcccacttcagcaacgagttgctatagaaaactatcct
cacggtggggccacaggctttgtcaacgatgctcaagttgcagttgtaagagacttgatc
attgctaacggtggcgctgtgagatcaccagaagagttttctaagttacaaacgattatt
aaaccattagttccgagtaaggtacgcgcaatagttgtcgagctagcccctggcattaac
tcttatctccgcgttaaatccgagataaacaactggaccggcccagccatcgacgacatt
aataatcagctcaattttctccttccaccgcgggcgatatcccaacatggggcacaccgc
ctcaagcatctcccaaggtacgtgcaagcaatcacgcttcggctcgaagatatggagcgc
atgccagaccgggatgcagacaggcagttactagttaatcgactagagcgaggcttagca
caaaaaatccaaaaatctggacaaggaaaatctgctcaccaagtacgtgatattcagtgg
ttgattcaggaattacgtgtcagcctttttgcccaacggctagggactacgcaatcagtt
tctgagagaaaaatcgcaaaagcaatcgaacagctctaa
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