Lodderomyces orthopsilosis: CORT_0A00940
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Entry
CORT_0A00940 CDS
T02488
Name
(RefSeq) Prp40 protein
KO
K12821
pre-mRNA-processing factor 40
Organism
cot
Lodderomyces orthopsilosis
Pathway
cot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CORT_0A00940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cot03041
]
CORT_0A00940
Spliceosome [BR:
cot03041
]
Complex A
U1 snRNP components
U1 related factors
CORT_0A00940
Complex B
CORT_0A00940
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Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
CEP164_N
Glyco_hyd_101C
Choline_bind_3
R3H_PUS7L
Motif
Other DBs
NCBI-GeneID:
14537342
NCBI-ProteinID:
XP_003865926
UniProt:
H8WVL2
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All DBs
Position
1:208222..209748
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AA seq
508 aa
AA seq
DB search
MSLINIPHFIMSVWEQLKTEEGQTYYYNKETSETSWTLPEGEEASVVTSGWQEYITDDGK
TYYYNESTGETTWDKPEELEVDVTSNEKEEEEEEEDAIDQALKHQPVELPTSMSSTDISE
EDEQAFIQFLKDKNVDSTWSFQTVMQKLVSKPEYWSVHNPIKRKSLYEKYLVQRFEDEIK
NKTDVIERFKINFIKELEKLRNEGELDYRTRWISLRKKFVEEENPIFKHSMLPDLDLAKM
FYKYTAELKKEHEYEDQKLKHQATDELYNYLHSINNALVQKTSNFQELYANLIEDPRFKQ
NKHFRHLKELDILNLYEFKLYPELVEGLKKQIKIQEKVNYRSDRKARQNYRSLLATLTLD
AKTKFSDIFSTIENEDAFIELCGRNGSSPLELFWDIIDEKKQEMKLRKDLVEAVINDLQK
KGELGQSIWATKDSFVDKLKQVKDDRLLQFNLKEERTNNEIFDIYQTLKDERELKERIIK
KRGISEIDIGSAAGPAKKMKKQVKKMNY
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgctgttgatcaatattccacactttatcatgtctgtttgggagcaattgaagacagaa
gagggacaaacatactactataataaagagacactggaaacaagctggaccttaccagag
ggggaagaagccagtgttgttacctcaggttggcaagagtacatcacagatgatgggaaa
acgtattattacaatgagtcaacaggggaaactacttgggataagccagaagagttagaa
gtggatgtcacactgaatgaaaaagaggaagaagaagaagaagaagatgcgattgaccaa
gctctcaagcatcaaccagtagaactacctactagtatgagttctaccgatatttcggaa
gaggatgaacaggcgtttattcagtttttgaaggacaaaaatgtcgactcgacctggtct
tttcaaacagttatgcagaaattggttagcaagcctgaatattggtccgttcacaaccca
atcaaaagaaagtccttatacgagaagtaccttgttcaaagatttgaagatgaaatcaaa
aacaagacagatgtaattgagcggtttaagataaattttatcaaagaattggaaaagttg
agaaatgagggtgaacttgattatagaactagatggataagtctacgaaaaaaattcgtg
gaggaagagaaccccattttcaagcattcaatgttgccggatctagatttggccaagatg
ttttacaagtacacagctgagttgaaaaaagaacacgaatatgaagatcagaaactaaag
catcaagcaaccgatgagctctacaattatctccacctgatcaacaatgcattagttcag
aaaacatctaattttcaagagctttacgctaatttaatagaagacccgcgtttcaaacaa
aataaacacttcagacacttgaaggaattggatatactaaatttatacgaatttaaactt
taccctgaattggtagagggtctaaagaagcaaataaagatacaagaaaaggtgaattat
cgaagtgatcgcaaagcacgccaaaattaccgatccttactagctacactaaccttggat
gcgaagaccaaattcagcgatattttcagcactatagaaaatgaagatgcgttcatcgag
ttgtgtggcagaaacggatcatcaccattagagttgttctgggacattattgatgaaaag
aaacaggagatgaagctacgaaaggatttagtcgaagcagtgatcaatgatttgcaaaaa
aaaggagaacttggccagagtatatgggccaccaaggattcattcgtggataagctcaag
caggttaaagacgatagattactacagtttaatttgaaggaggaaagaactaacaatgaa
atttttgatatataccaaacattgaaagatgaacgtgaattgaaggagagaataatcaaa
aagagaggtatttcggaaattgatataggttctgctgccggcccagcaaagaagatgaag
aaacaggtgaaaaagatgaactattga
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