Lodderomyces orthopsilosis: CORT_0A01850
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Entry
CORT_0A01850 CDS
T02488
Name
(RefSeq) Msh6 protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
cot
Lodderomyces orthopsilosis
Pathway
cot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CORT_0A01850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cot03400
]
CORT_0A01850
DNA repair and recombination proteins [BR:
cot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
CORT_0A01850
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
DUF8810
AAA_27
AAA_29
Motif
Other DBs
NCBI-GeneID:
14536841
NCBI-ProteinID:
XP_003866016
UniProt:
H8WVV2
LinkDB
All DBs
Position
1:407325..411053
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AA seq
1242 aa
AA seq
DB search
MGTIRETTTPRRKGIANINGNSSSNKKKQASLMSFFKPMAAKNEVTKESNVSPDEPVKQN
CVSSSSPLKSKTIVKQELSSDKENDSTLMHYDEDEYRDLSFSSSLTSPPDVNLVKQEPKS
LNATIKNNELASTPLKGHRTALNSSPINSNRHARKQVNYAETESEDEDTVIQSSRKKRKA
VQEPSDDEDDFQPIISEGDSDDDMSDFVMVDDEEDEDEPPFSEDEEEIPKAKKSGSSCRA
KSTSIDVSVLDVNTSIESTVPTSYDLIDKFNASSLYDASGYKTKQFSSKPLPTTKKNFAK
ENEERYQWLVNIKDAEKRTPDDPNYDPRTLYIPQSAWSKFTAFEKQYWEIKSKMWNTVVF
FKKGKFYELYENDAVIANTQFDLKIAGGGRANMKLAGIPEMSFEHWAKEFISHGYKVAKV
DQKESMLAKEMRGGGSKEEKIIKRELTGVLTGGTLTNLDMITDDMSTYCLSIKEDTAEDG
SKIFGVAFVDTATSELNLIELHDDAECTKLDTLITQVKPKEIICEKGNLCNIATQILKFC
AHSNNQIWNSLNPITEFWDYDIAVEQLVKSKYYDAEDLDDFSKYPEVLVDIKKNHLVAFN
AFGGLLSYLKTLKLDESIMSLGNIKQYKISENETSHMILDGITLGNLEILNNNYDGGDQG
TLLKLVNRATTPFGKRHLKKWILHPLMRIDEINLRYDSIDYLMDEGSELRSILQDCLTSL
PDLERLIARVHGGTLRFRDFLRVIESFESIARFSKQLLEFANVDCGVLYKYLQSFPQDMV
EHISEWEDAFERQQALSDVIIPAKGVDAEFDESQAVIDDLENQLNELLKGYKKEFKSHEI
LYRDSGKEIYLIELPVKLVKHVPQSWQTMGATSKVKRFWSPEVKHLARKLMEQRESHKMV
CDTLKNRMYAKFDAHYTTWMKVINCIANIDSILALAKVSESIGYPSCRPEFVQNDHGVLD
FKELRHPCFVGTKDFIPNDIHLGGEEPNFGLLTGANAAGKSTIMRTTALAVILSQIGCYI
PASSARLTPVDRIMTRLGANDNIMQGKSTFFVELSETKKILSNATPKSLVILDELGRGGS
SSDGFAIAEAVLHHLATHLQPVGFFATHYNTLGVSFKSHPQIKPMRMAIVVDQESRDITF
LYKLEDGTAPGSFGMNVALMCGIPREIVDNAEIAAKNYEQVSSLKRTYEEVDKEDEMSLG
LQSDCVWYGTDRVKLLKQDILNYEASVQERALDNVYKMIDSL
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgggtacaataagagaaacaactacaccaaggagaaaaggcatagccaatattaatggt
aactcctctagcaataagaagaagcaagcatcgttaatgtctttctttaagcccatggca
gccaaaaatgaggtaaccaaagaaagcaacgtgtcaccagatgagccagtgaaacaaaac
tgtgtgtcttcgtcttcccccttaaagtctaagacaatagttaagcaagaattatcaagt
gataaggaaaatgatagtacattgatgcattatgatgaggatgagtatagggatttgtca
ttttcatcaagcttgacttcaccaccagatgtgaatttagttaagcaagaacccaagctg
ttaaatgccactataaagaacaatgaattagcaagtacgcccttgaagggtcatagaaca
gcgctcaactcaagtcctatcaattccaaccgccatgcaaggaaacaagtcaactacgct
gagacagaatctgaagatgaagataccgtcattcagtcatcccgtaagaagagaaaagct
gtacaagagccaagtgacgacgaagatgactttcaaccaattatttccgaaggtgacagt
gatgatgatatgagtgatttcgtaatggttgacgatgaagaagacgaagatgagccaccc
tttctggaagacgaggaggagattcctaaagctaagaaatcgggtctgtcatgcagggca
aagtctacttcaattgatgtctcagttttagatgttaatacatcaattgaatcaactgtc
cccacatcatatgacttaattgacaagtttaatgcatcttcattatatgacgcgtcagga
tacaaaacaaaacagttcctgtcaaagccattgcccaccaccaaaaagaattttgctaaa
gaaaatgaagagagataccaatggcttgtcaatattaaagatgctgaaaagagaactcca
gatgatccaaattatgatccaagaacactttatattcctcaatctgcatggtcaaaattt
actgcatttgaaaagcagtattgggaaattaagtcgaaaatgtggaatactgttgttttc
ttcaaaaaggggaaattttacgagctatatgaaaatgatgccgtgattgctaatacccaa
tttgatcttaagattgctggtggtggaagggcaaatatgaaattggcgggtataccggaa
atgtcgtttgagcactgggcaaaggaatttatcagtcatggctacaaagtagctaaggtg
gatcaaaaggaatctatgttggctaaagaaatgagaggtggtgggtctaaagaggaaaag
attatcaagagagaattaaccggtgtgttgactgggggtactttaaccaatttagatatg
atcacggatgatatgtctacgtactgtctaagcattaaagaggatacagccgaggatggg
tcaaagatttttggtgttgcttttgttgatactgcaacttccgaattgaatttgattgag
ttgcacgatgacgccgaatgtaccaaacttgacacgttaatcacacaagtcaaacctaaa
gaaatcatttgtgaaaagggaaatctttgtaacattgcaactcaaattttaaagttttgt
gcccattccaataaccaaatttggaacagcttgaatccgatcactgagttttgggactac
gatattgctgttgaacaattggttaaatcaaagtattatgatgctgaggatttggacgat
ttttccaaatacccagaggtccttgttgacattaaaaagaatcaccttgttgcattcaat
gcatttggtggtttgttatcttacttgaaaactctcaagttggatgaaagtatcatgagc
ttgggtaatattaaacaatacaagatttcagaaaatgaaacttcacacatgattcttgat
ggtatcactttgggtaatttggagattctcaacaacaattacgatggtggcgatcaaggt
acattattgaaattggtgaatcgggcaactacgccattcgggaaaagacatttgaagaaa
tggatcttgcaccccttaatgcgtattgatgaaatcaacctaaggtacgattcaatagac
tacttgatggatgagggttctgagttgagatcaatcttgcaggactgtttgacatccttg
cctgatctagaacgtttaattgctcgtgtacatggtggaacccttcgattccgggatttt
ctcagagtgattgaaagttttgagagtatcgccagattttccaaacaattgttggaattt
gccaatgttgattgcggtgtattgtataaatatttgcaatctttcccccaggacatggtt
gagcatatttcggaatgggaggatgcttttgaaaggcaacaagcattaagtgatgttatt
attcctgcaaagggagttgatgcagaatttgatgaatcacaagctgtcattgatgattta
gaaaatcagttgaatgagcttttgaaagggtataagaaagaatttaaatcgcatgagatt
ctttatcgtgattcaggaaaagaaatttaccttattgaacttcctgtaaaattggttaaa
catgtacctcagagttggcaaactatgggtgcaacttcaaaagttaagagattttggtca
ccagaagtcaagcatttagcaaggaagttgatggaacaaagagagtcacataaaatggtt
tgtgatacattaaagaataggatgtatgcaaaatttgatgcacattatacaacttggatg
aaagtcatcaattgcatagccaatatcgactctatacttgcattggctaaagtttcagaa
tcaatcggttacccttcatgccgtccagagtttgttcaaaatgatcatggtgtgcttgat
tttaaggagttgaggcatccttgttttgttggaacaaaagatttcattccaaatgacatt
cacttgggtggtgaagaacctaattttggtttattgaccggagccaatgctgcaggtaaa
tctacaattatgagaaccacagctttggcagtgatcttgagtcagattggctgttatata
cctgcactgctggcaagattaaccccagtggataggatcatgacgagactaggtgcaaac
gataatataatgcaagggaaatcaacgttctttgttgagctttcagaaacgaaaaagatc
ttaagcaatgctacacctaaatcattggtgattttagatgaattgggtagaggtggttca
agtagtgatggtttcgccattgccgaagcagttttgcatcatttggctactcatttacaa
ccagttggattctttgccactcattacaataccctaggtgtatcatttaaatcccaccca
caaataaaaccaatgaggatggcaatcgtagtcgatcaagagtctagagatattacattt
ttgtacaaattagaagatggaaccgcaccaggatcatttggaatgaacgtggcattaatg
tgtggaattcccagagagattgttgataatgctgaaattgcagcaaagaattacgaacaa
gtatcgagtttgaaacgtacttatgaagaagtagataaggaggatgaaatgagtttgggt
ttacaaagtgattgtgtgtggtatggtactgatagagtcaagttgttgaaacaggatata
ttgaactatgaagcttcagttcaagaaagggctcttgataatgtctataaaatgattgat
tctttatag
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