Candida orthopsilosis: CORT_0A04670
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Entry
CORT_0A04670 CDS
T02488
Name
(RefSeq) Ccr4 component of the Ccr4-Pop2 mRNA deadenylase
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cot
Candida orthopsilosis
Pathway
cot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CORT_0A04670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0A04670
Enzymes [BR:
cot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
CORT_0A04670
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CORT_0A04670
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CORT_0A04670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
CERK_C
TFIIA
Motif
Other DBs
NCBI-GeneID:
14537369
NCBI-ProteinID:
XP_003866295
UniProt:
H8WWN1
LinkDB
All DBs
Position
1:1009251..1011620
Genome browser
AA seq
789 aa
AA seq
DB search
MNLASKFQQNQGQQPQSNLQAQQILLQQLHQGQSHPPPPPPPPPQQQQQATSNGLNAAFQ
PNESFNDNLNGLYQNNYSRAQPNLQQQQYFPQFQQNQSKQAGGNGLNIGSGASQLQQPYQ
ANHLPRQVPHLQQQFYNQHQAAALQKQQQQQQQQQQQQQQQQQQQSLHQAQQIQLQGSQL
QTPIQKASTLHVDNPNTSFWQHQQQLCQLSRSSTDPHNYARQYASNSRKLKNPYAETKSI
GLIEATKVIVASIEEEEQKKKLATRDPTSAALLHNKKITQDLDDDSMEEQRMRLKTQGRQ
LWCQLDLSGQGLVNLSPRLFQYDFLESLYLNNNKLTSIPPEISKLRSLRTLDLSHNRLSE
LPSELGLCFNLRFLYLFDNNIKSLPASFGNLFELQFLGVEGNPLDLNIANLVAEKGTKEL
IAAIRDQKSTIASPEPRHWLRVEDDGEVVDTNEPYKQEQSTGNVFTLMSYNTLCQHYATP
KMYKFTPSWALQWEYRRDLLEKEVLNYSTDIICMQEVETRTYMEFWGPLLAQKGYKGLFF
NKTRSKTMSENDSKKVDGCATFYKVDKFTLVHKQNFEYNSVCMGSDKYKKTKDLFNRFMN
KDNIALISYLEHKETGERICFVNTHLHWDPAFNDVKTLQIGILLEELQGFIKKYQQTSSM
EEVKKAPIVICGDFNSVKQSAVYQLFSTGSSKDHSDLSGKDYGKFTESGFHHPFKLKSAY
DAIGELPFTNLSPSFTDDIDYIWYSTSKLQVRGLLGEIDKKYVSHCIGFPDPNFPSDHVP
ILAKFQIKK
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagctagtaaatttcaacagaatcagggccaacaacctcaatccaaccttcag
gcacaacaaattttgttacaacagcttcaccaagggcaatctcatccaccaccaccgcca
ccaccaccaccacaacaacaacaacaggctacatccaatgggctaaatgctgcattccaa
ccaaatgagagtttcaatgacaacttgaatggcctatatcaaaataattacctgcgagct
caaccaaatttacaacaacaacaatatttcccccagtttcaacaaaatcaactgaaacaa
gctggaggaaatggtctcaacattgggagtggtgcatcacaattgcaacaaccatatcag
gcaaatcacctaccaagacaagttccccatcttcaacaacaattctataatcaacatcaa
gctgcggcgcttcaaaagcagcaacagcagcagcagcagcagcaacaacaacaacaacaa
caacaacaacagcagagcctacaccaagcacaacagatacaattgcaaggatctcaatta
caaactcctattcaaaaggctagcactttgcacgttgataatccaaacactagcttttgg
cagcatcaacaacaattgtgtcaactttcaaggtcatctactgatcctcataactatgca
agacaatatgcatccaattcgaggaaattgaagaacccatatgctgaaactaaatccatt
gggcttattgaagcgactaaagtcattgttgcaagtattgaagaagaagaacagaaaaag
aaacttgcaactagggatcctactagtgcagcattgttgcataataagaaaattactcaa
gatcttgacgatgattcaatggaagaacaaaggatgcgattgaagactcaaggccgtcaa
ttatggtgtcaacttgatttgagtggacaaggattggttaatctttcacccaggttattt
cagtatgattttttggagtcgttatatttgaacaataacaaattgactagtatacctcct
gaaattagcaaattgagaagtttacgaactctagatttatcacacaaccgacttagtgaa
ttgccatctgagcttggattatgtttcaatttgaggtttttgtatctttttgacaataac
atcaaatccctacctgcttcatttggtaacttgtttgaacttcaatttcttggtgttgaa
gggaacccacttgatttgaacattgccaatttggttgctgagaagggtactaaggagcta
atagccgcaattagagatcaaaagtcgacaatagcatcacctgagccacgccattggttg
cgagtggaagatgatggagaggttgttgataccaacgagccatacaaacaggagcaaagt
acaggtaatgtattcacgttgatgtcctacaacactttgtgtcaacattatgctacgcca
aaaatgtacaagtttactccatcgtgggcattacaatgggagtatagaagagacctttta
gagaaggaggttttgaactatagtactgatattatatgtatgcaagaagttgaaactaga
acatacatggagttttggggaccgttgttagcacaaaagggatacaagggattgtttttc
aataaaacaagatcaaagacaatgagcgaaaatgattcaaagaaggttgatggatgtgcc
acattttacaaagtggataagttcacattagtacacaagcaaaattttgaatacaatagt
gtctgcatgggatctgacaaatacaaaaagaccaaagatttgttcaacagattcatgaat
aaagataatatcgcgttgatatcatacttggaacataaggaaactggagaaagaatttgt
tttgtcaatactcatttacattgggatccagcatttaatgatgtcaagaccctacaaatt
ggaattttgttggaagaattgcaaggctttatcaagaaatatcaacagacctcgtcaatg
gaagaagttaaaaaggcgccaattgtcatatgtggcgatttcaattcagtcaaacaatcg
gctgtataccaattattttccaccggttcctccaaagatcattctgatttatctggtaaa
gattatggaaaattcactgaatctggattccatcatccattcaaattgaaatcagcttat
gatgcgattggagaattaccatttactaatctttcaccttcatttactgatgacattgat
tacatctggtattcaacttcgaaactacaagttagaggattactaggcgagattgataag
aagtatgtttcacattgtattggatttcctgatccgaatttcccatcggatcatgtgcct
atattagccaaatttcaaataaagaaataa
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