Lodderomyces orthopsilosis: CORT_0A08830
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Entry
CORT_0A08830 CDS
T02488
Name
(RefSeq) THO complex subunit
KO
K12879
THO complex subunit 2
Organism
cot
Lodderomyces orthopsilosis
Pathway
cot03013
Nucleocytoplasmic transport
cot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CORT_0A08830
09122 Translation
03013 Nucleocytoplasmic transport
CORT_0A08830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0A08830
03041 Spliceosome [BR:
cot03041
]
CORT_0A08830
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
CORT_0A08830
Spliceosome [BR:
cot03041
]
Complex C
Other components
EJC/TREX
CORT_0A08830
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CORT_0A08830
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
14536902
NCBI-ProteinID:
XP_003866706
UniProt:
H8WYF2
LinkDB
All DBs
Position
1:1950247..1954959
Genome browser
AA seq
1570 aa
AA seq
DB search
MSFKYFTDDIIEQFAGTGSIEIFEALDSYETSNPEAEEEVVLLFAEMILSYEEGALKMEH
IVDFLSQLIKNDDVARLFCQVLNSFPVTENTRALLSTLTQNENVIKSHTISLYISSDFIK
ETDIVPSKVLLKSLNTKLRDKLYTQKKYNLLHEEIEGYSKFVVEIHDAFAADDTDLQIDY
ALQVVEKLMGHYSLDPNRCLDILFEILSEVVVGKVDSVLQFFRKSRWWPALESDNSSIKS
LSTGGSAIAAKIIGLKILNYSKTKDLPESFKALVTILIKEGFISFGSVFKYMRPGEDIMK
ELEDKYNRKLEEEVLKAGANALALAAPLADDENEDGKDKKRLSTPAGSKTDLQLHVNYKY
QFLKSFLSNGLYWPSIYILTAYPVLADIDEEIPKLLIRVFGAMIEPLYKQISPFEAEELN
CVQAAKGAYFPRSGNNVAIEPFKPADFYTFKPIGKHHTQRTLHYFYQNWTKYLPKVDGFA
SLFKVSSEMLKFVGSNLSKDVEVFIKLCEIIQSLQSQEELKEDIFHYFRNYIFPSMPLIS
ENSIAIDKAYSILAVYPAEDRFSVYGELYNNLRKNNTSIKIAYSSAEKATKDILKRLSKE
NVRPMMRRLAKISFSNPLPCLLTILQQIESYDNLNTLVVETARYFNSYGWDNLTIAILIR
LSSDRRSLHDNGMGERQWLQSLASFVGKICQKYQKAIDTKMILLYLLKTFYTGDRTGLSV
LKEMIISMGGIQTTSDLTLRQIDMINCGSALQKVVYRTIDDLRFDRFDSGTHLLKCLVDL
HAVNEFVILLCSMYNDIVYDVDENQLKVLANRVDDLTSVIKLFVTLVCFFGDGNTEVMPI
TELYKKYNVPIEWGFDLWRQKKDAFETLQSQGADLCPPGFPPSLYTLFWCLSLKDVNYSA
SLYDEELGKLESSIRGLRDAININSKDKDFPRATIEKFMKDIEENELFIKEIPLDKLKHK
DLNEATNQKMRNLSLGWFTSDVPTKVETFIKSCILPRAIPSSFDAVYSARFLFKLQELEV
ENYSLFDVLDGLTKLELLSSSLFSSTPTEAENLGFFFAYILKRLQEFTDVEIVKELHVSD
FEKYRNWVYDFHSVILSEVEIALETNEYMSRSNTITFLKNLLGVYPVVEDHCEKMLSLIE
KVYTGEDKEDIKLSSGALLNHLKSRAKLWIPVWDFKSISEEEKQEIIDKKEKLEKEKQEA
ERLSKEEAERVENEKREARLNEEKKAKEEELKKKLATINYGSRSRLASRSSSRIVEAKPK
GKYDEYQRNNEDKMDIDSNEDKVLTTFGNSENKAERAEQEEAIKKTEYDETSENDKMEEN
STKPSKEEADGETTHTTGVTEAEYAAEAEDEGVNKTQTLNLEKDGEDREENGDDVTQPQQ
ESAAEQDIKPTELLKRSSLPPQSELPKGPEIKDSAINRRIPLPPQEKLLASGDRSTRFGA
RASGIGTGPAPRKFGESFNLSTPPPPPPPPPPVSQSRSNFGSTRSSFGHRDQYGSSSRSH
TTYDNRRGRGFDNRPVNGPRGGPTNFNSNRYDGRQARSDGNGPDGASYENSNKRRADGQG
GRGYEKRHKY
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcaagtacttcacagatgatataatagagcaatttgctggaactgggagcatc
gaaatctttgaggcgttggattcttacgaaacatcgaatccagaagccgaggaagaagtt
gtcctacttttcgctgaaatgatcttatcatatgaagaaggggctttgaaaatggaacac
atagtcgattttcttagtcaattgataaagaatgatgatgtagcaagattgttctgtcaa
gtgttgaattcattccccgtcacagaaaatacgcgagctttactatcaacgcttactcaa
aatgaaaatgtaatcaaatcgcacacgatatcattatatatcagttcagactttatcaag
gaaacggatattgtccctagtaaagtgttattgaaatcattgaatacaaagttgagagat
aagttgtacacgcagaaaaagtacaatttgttacatgaggagattgaagggtattcgaaa
tttgttgttgaaatacatgatgcttttgcagcagatgatactgatttgcaaattgattat
gccttgcaagttgtcgagaagttgatgggccactacagtcttgacccaaacaggtgtttg
gatattttgtttgaaattctttctgaagtcgttgtgggaaaggtcgattctgttttacaa
tttttcagaaaaagtcgatggtggcctgcattggaaagtgataactcctccatcaaatcg
ttatcaactggaggaagtgccattgcagcaaaaattattggattaaagatattgaattat
tcgaaaactaaagacttgcctgaactgttcaaagctttggtgacaattctcatcaaggaa
ggatttataagctttggttctgtgttcaagtatatgcgtcctggcgaagatattatgaag
gaactcgaggataaatacaatcgaaaattagaggaagaggtgttgaaagctggtgcgaat
gctttggctctagctgctcctcttgccgatgatgaaaatgaggatggaaaggacaagaaa
cgactcagtaccccagctggaagcaagactgatttgcaattacatgtcaactacaaatac
caatttttaaagtcctttctaagcaacggactctactggccatcaatatatattttaact
gcgtatccggttttggcagatatagatgaggaaattccgaagcttttgatacgagtgttt
ggggcaatgattgaaccattgtacaagcaaatttctccattcgaagctgaagagcttaat
tgtgtacaagctgcgaagggggcttactttcctcgttcgggaaacaacgttgctattgaa
ccattcaagccagcagacttttatacctttaaaccaataggaaaacaccacacacaaaga
acattgcactacttttaccaaaattggactaaatatttgccaaaggtagacggttttgct
tccttgttcaaagtatcactggagatgttgaagttcgttggctccaatttgtcaaaagat
gttgaagtttttatcaaattgtgtgagattattcaatcactccagtctcaagaagaatta
aaggaagacatatttcactacttcagaaactacatattcccactgatgcctctaatactg
gaaaattcaatcgcaatagacaaggcgtattcgattttagctgtatatcctgctgaagat
cgtttcagtgtttatggcgaattgtacaacaatttaaggaaaaacaatacactgatcaaa
attgcttatagtagcgccgaaaaggcaacgaaggatattttgaaaagattatcgaaggag
aatgtgcgtccaatgatgagaaggttagctaaaatcagtttttccaatccgcttccatgt
ttgttgacaatattacaacaaattgaaagctatgacaacttgaatactttagtagtggaa
acagcaaggtacttcaacagctatggttgggacaatttgactattgctattttgatcagg
cttagctcggatcgaagatcacttcacgataatggtatgggagaaaggcaatggctccag
tcgcttgcgtcttttgttggaaagatttgccaaaaatatcaaaaagctattgatactaaa
atgatattgctttatttgctcaaaacattttacacaggagatagaaccggtttgtcagta
ttgaaagagatgattatttcgatgggtgggatccaaaccacttcagatttgactcttcgt
caaatagacatgatcaattgtggatccgctttacagaaagtcgtttaccgcacgatcgac
gacttgaggtttgataggtttgattcaggaacacacttgttgaagtgccttgttgacttg
cacgcagttaatgagtttgtcatcctactttgctcaatgtacaacgacatagtctatgac
gtggacgaaaatcagttgaaagtgttggctaatagagttgatgatttaacctccgtgatt
aagctttttgtcaccttggtttgcttctttggtgatgggaacactgaagtgatgccgatt
acggagttgtacaaaaagtacaatgtacccattgagtggggattcgatttatggagacaa
aaaaaggatgcctttgaaactctacaaagccagggcgctgacttatgcccaccgggtttc
cctcccagcttgtacactttattttggtgtttgagcttgaaggatgtgaattattcggct
ctgttgtatgatgaagaattaggtaagctagagtcgagtattagaggattgagagacgct
attaatatcaattcaaaggacaaggactttcccagggctacgattgagaagttcatgaaa
gatatagaagagaacgagcttttcattaaagagataccattggacaagttgaaacataag
gacttgaatgaagctactaaccagaaaatgcgcaatttgtcattgggttggtttacttct
gacgttcccacgaaagttgaaacatttataaaatcgtgcatactaccaagggcaattcct
tcttcatttgatgcagtatattcagcaagattcctttttaaattacaagagttggaagta
gaaaattattcgctctttgatgttttggatggattgaccaagcttgagttgttatcatca
agtttgttttcctcgacgcctactgaagctgagaatttaggatttttctttgcctatata
ttgaagcgattgcaggagtttacagatgtggaaatagtcaaagaattgcatgtgagtgat
tttgaaaagtatcgcaattgggtctatgatttccatagtgttatattgtctgaggtggaa
attgcattggaaacgaacgagtacatgtcacgcagtaacaccatcacctttttgaagaat
ttgcttggcgtgtacccagttgtggaggatcactgtgagaagatgttgagcttgattgaa
aaggtttatactggagaggacaaggaggacatcaagttatcttcaggggcattactaaac
caccttaaatcgagagctaagctttggataccagtatgggactttaaatcaattagtgaa
gaagaaaagcaagaaatcattgacaagaaagaaaagcttgagaaagagaaacaagaagca
gagagattatctaaagaggaggccgagcgtgttgagaatgaaaagcgtgaagctcggtta
aatgaggagaagaaggcaaaagaagaagagcttaaaaaaaaacttgctactatcaattat
ggttcccgactgagacttgctagtaggtcatctagtcgaattgttgaagctaagcctaag
ggtaaatatgatgaataccaaaggaacaacgaggataagatggatattgattccaatgag
gacaaagttctcactacttttggaaactctgaaaataaggctgaacgtgcggaacaagaa
gaggcaatcaagaagacagaatatgatgaaactagtgaaaatgacaagatggaagaaaat
tcaacgaagccatcgaaagaagaagctgatggtgagacgacacacacaacaggagtcaca
gaagctgaatatgcagctgaagcggaagatgaaggcgtcaacaaaacacaaactctcaat
cttgaaaaggacggagaagatcgtgaagaaaatggcgacgatgttacacaaccacaacaa
gagagcgcagctgaacaagatatcaagccaacggaactactaaagagactgtctcttcca
ccccaaagtgaacttccaaaaggtcctgaaatcaaagatagcgccattaataggaggatt
ccattaccaccacaagaaaaacttttagctagcggggatcgatcaacacgatttggtgcg
cgtgcatctggaataggaacaggaccggctccacgtaagtttggagaatctttcaattta
tccactccacctccaccaccaccccctcctcctccagtatcccaatcccgctcaaatttt
ggctctacacgttcatcctttggtcatcgagatcaatatggttcatcttcaagatcacat
actacttatgacaatagacgtggtaggggatttgataatcgaccggtgaacggcccgcgt
ggtggccctaccaattttaattccaaccgctatgatgggagacaagctaggagcgacggc
aatggacctgatggcgcatcatacgaaaacagtaacaaaagaagagccgatggacaagga
ggtagaggatacgaaaaaaggcataaatattag
DBGET
integrated database retrieval system
