Lodderomyces orthopsilosis: CORT_0A10790
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Entry
CORT_0A10790 CDS
T02488
Name
(RefSeq) Nmd2 protein
KO
K14327
regulator of nonsense transcripts 2
Organism
cot
Lodderomyces orthopsilosis
Pathway
cot03013
Nucleocytoplasmic transport
cot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CORT_0A10790
03015 mRNA surveillance pathway
CORT_0A10790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0A10790
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CORT_0A10790
mRNA cycle factors
P-body specific factors
CORT_0A10790
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
14537448
NCBI-ProteinID:
XP_003866902
UniProt:
H8WXF8
LinkDB
All DBs
Position
1:complement(2368701..2371889)
Genome browser
AA seq
1062 aa
AA seq
DB search
MTTEFDGRRKDLFEINSKAWAGEYEFPLATKLDSSLKKNSAFIKKVKTGLNQEQYSNVLK
DIGSVSIEKYLSEVIVSLVEGLCKVSKNDEINAAVEVISALHQRFGKQFTGDLLNGILVN
IVNPSKAELADKEESSRLSRQKNLLRLVGEFYIVGILQTAADFLDVLDSKVIKSFALDKR
RNEPILILLLKYLLNFEIESGRSLNMVQSFLKRFSHIIFSDSELLPSDSRHVLKQIFLIY
TEAVFNIMMKIKKQVHKLDVRNKKAAIRTGRILEDEQSEFDERKKLFEQFKAIASFLSQV
CDLSLPDDLNDVTEEEEEEDNSVEVVKQAVGNDEDSVGIWEDAKEKNFYTVIPSLGELLE
AHPETPNCKSTQSHKDGEKIQEFLDRLEDVRGNNLEQLVVEFNNLNLNNKATKNRIMRFF
IETSTLNNLKYYTRFLKINELNLSELIEELITYLDKGFRSQIHRNKLNVKNILFFVELIK
FKMVPKHVVFHKIRSLTLNVTSTNNIEILTVFYEHVGRFLLHDAESKDLMREMIDLLREK
SKQSNLNVNDKLAINNLLITVEPPVTKVQTLREAPKLSTKQMFIQKILREELNSDTRSLV
VKHFRAKFGQLGQAEYYTLVDCFSKPNLINYDNIPALAKVLSAFGEKYKSLVVLSVDTIV
EDIIRGLELNDFRMNRTRMAQVKYLAELYNSRVINFKLLNDMLYRILCYGHPQNQPLPQN
WDVAIDMPNNYFRIQMCCLLLISIKSIFVDTDVGKKKSSNRAASIKRRNDINKDLLGVFM
TFFQYYMYCKESPFPVDVEFRLDDLFKKYKSIPTVKRYDTIQEVLRGLGGAMQKRKEAES
LLEKEDESVESEPEKQLISASVSSDDDSDADYDDGDEEEGEDENDDEEDSDDDDDSEDDD
DDDEDDDEESGESDEEDEELGDDDLSRVSSSEDQISEAERARLEAERIFQEDLDREFQKI
MIESYGSTQQQQQQQQHPGKQPAFKQSLPLPSQLNISERSSGSANKQGTVAFGLLTKNGK
NQKIKQLNLPSDNIFAESVVREQENRKRDKQRIIKLASRMDD
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagaattcgatggtcgacggaaagatttgtttgaaataaattcaaaggcttgg
gcaggagagtatgaattccctcttgcaaccaagttagattcatcattaaagaagaattca
gcatttatcaagaaagtaaagactggattaaaccaagagcagtactctaatgttttgaaa
gatattggatctgtgtctatagagaagtacttgtcagaagttattgtatcacttgtggag
ggtttgtgcaaagtttcaaagaatgatgaaataaatgcagcagtggaagttatatctgca
ttacatcaaaggtttggaaaacaatttacgggggatttgttgaacggcatattggtcaac
atagtgaacccatcaaaagcggaattggctgataaggaggaatcttctcgcttatcccgt
cagaagaatcttttgcgtttggttggagagttttacattgttggaattttacaaactgca
gccgactttttggatgttttagattcaaaagtgatcaaaagttttgctttagacaaaaga
agaaatgagccgatattaattttgttgttgaaatacttactaaactttgaaatcgaactg
ggaagaagcttaaatatggtgcagtcatttttgaaaaggttcagtcatatcatttttagt
gatagcgagctcttaccactggactctaggcatgtgctaaaacaaatattcctcatctac
acagaggcggttttcaatatcatgatgaagatcaaaaagcaggtacataaactagacgtt
cgtaacaaaaaagcagccatcagaactggacgtatcttagaagatgaacaactggagttt
gatgaaagaaaaaaattatttgagcaattcaaagcaatagcgagtttcttatcccaggtg
tgtgacttgtcgttgccagatgatttgaatgatgtaacagaagaagaggaagaggaggat
aattctgtcgaagtagtgaagcaggcagtaggtaatgacgaagacctggttggaatttgg
gaagatgctaaggagaaaaacttttacacagttattccgctgttaggtgagttgttagag
gctcacccagaaactcccaactgtaaatccacacaatcccataaagacggagaaaagatt
caagagttcttagacaggttggaagatgttcggggcaacaacttggaacagctagttgtg
gagtttaacaatttgaatttgaacaacaaagctacaaagaacaggattatgcgattcttt
attgaaacatctactttgaataatttaaagtattacacgcgatttttgaaaattaatgaa
ctcaatttgtctgaattgattgaggaattgatcacatatttagacaaagggttccggtct
cagattcaccgaaataaactcaacgtgaaaaatattttattctttgttgagttgatcaag
tttaagatggtaccaaaacatgttgtgtttcataaaattcgtagtttgacgttgaacgtt
acatcaacaaacaatatagaaatattgactgtattttacgaacatgtgggcaggttctta
ctacatgatgcagagagcaaggatttgatgcgagaaatgattgatctattgagggaaaag
ctgaaacagtcaaatttgaatgttaatgacaagttagccatcaacaatttattaatcaca
gttgagccgccagtaacaaaggtccagactcttagggaagctcccaagctatccacaaaa
caaatgttcattcaaaaaatactcagggaggagttgaatctggacacgcggtctcttgtt
gtaaaacattttagagcaaagtttgggcaacttggtcaagctgaatattacactttggtc
gattgcttttccaaaccaaatttgattaactatgacaacattcctgctcttgcaaaagtt
ttactggcttttggtgaaaagtataaatcgttggtggtgctttctgttgataccattgtc
gaggatattattcgtggcttggaattgaacgactttaggatgaacagaactcgaatggct
caggtaaagtacttggcagagctatacaattcaagagtgatcaacttcaaactcctcaat
gacatgttgtaccgtatcctttgctatggccatccgcaaaatcagcctttgcctcaaaac
tgggatgttgcgattgacatgccaaataactatttccgaattcaaatgtgttgtttattg
ttaatatcaatcaagtcgatttttgtggatacagatgttggaaaaaagaagtccctgaac
cgtgctgcaagtatcaagcgaaggaatgacattaataaggatcttttgggtgtatttatg
acttttttccaatattacatgtactgcaaagagtctccattccctgtggatgttgaattt
aggttggatgacttgttcaaaaaatacaagagtattccgactgtgaagagatacgacact
atacaggaagttcttagaggcttgggtggtgctatgcagaaacgaaaggaagcggaatcc
ttattggagaaggaagatgaatctgttgaaagtgagccagaaaagcagcttatatctgcc
agtgtcagctcagacgatgatagcgatgctgattatgatgatggagatgaagaagagggg
gaagatgaaaatgacgacgaagaagatagtgacgatgatgacgacagtgaagatgatgac
gatgatgatgaagatgatgatgaggaaagtggtgaatcggatgaagaagatgaagagctt
ggtgatgatgatttatcacgtgtatcatcatctgaagatcaaatatcggaggctgaaagg
gctagacttgaagctgaacgaatatttcaagaagatttggatcgagaatttcaaaaaata
atgattgagtcgtatggatcaacacagcaacaacagcagcaacagcaacatccgggtaaa
caacctgctttcaaacagtcactaccgcttccaagccaactcaacatctcagagaggtca
tcgggtagtgctaataaacagggcacagtggcatttggtttgttgaccaagaatggtaag
aaccaaaagattaagcaacttaacttaccatcagataatatatttgctgaatccgtagtt
agagagcaagaaaatcgtaaacgtgataagcaaagaattattaaacttgcatctagaatg
gatgattaa
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