Lodderomyces orthopsilosis: CORT_0A12190
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Entry
CORT_0A12190 CDS
T02488
Name
(RefSeq) Rfc5 hypothetical proteineteropentameric replication factor C subunit
KO
K10756
replication factor C subunit 3/5
Organism
cot
Lodderomyces orthopsilosis
Pathway
cot03030
DNA replication
cot03410
Base excision repair
cot03420
Nucleotide excision repair
cot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CORT_0A12190
03410 Base excision repair
CORT_0A12190
03420 Nucleotide excision repair
CORT_0A12190
03430 Mismatch repair
CORT_0A12190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cot03032
]
CORT_0A12190
03036 Chromosome and associated proteins [BR:
cot03036
]
CORT_0A12190
03400 DNA repair and recombination proteins [BR:
cot03400
]
CORT_0A12190
DNA replication proteins [BR:
cot03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
CORT_0A12190
DNA Replication Termination Factors
ELG1-RFC complex
CORT_0A12190
Chromosome and associated proteins [BR:
cot03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
CORT_0A12190
DNA repair and recombination proteins [BR:
cot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
CORT_0A12190
Check point factors
HRAD17(Rad24)-RFC complex
CORT_0A12190
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA
AAA_22
nSTAND6
NAD_binding_5
Motif
Other DBs
NCBI-GeneID:
14537173
NCBI-ProteinID:
XP_003867042
UniProt:
H8WYX2
LinkDB
All DBs
Position
1:2682159..2683247
Genome browser
AA seq
362 aa
AA seq
DB search
MSLWVDKYRPKTLSQLSYHESITQNLRALSKSGDFPHLLVYGPSGAGKKTRIYCTLHEIF
GSSVEKLKIDVKNFVTTSNRKLEFNVLSSPYHLEITPSDMGNNDRVVIQDLLKDVASTEQ
VDFGNQNNRRHRFKVVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIK
SRTLLVRIPSPSVENISSILGHVAEKEHVKFSSSNGQEIAQFYSQVATTSHCNLRRSLLA
FETIYMQNETINVKQLHSVIVLDWEIVIKNMAKTITTSRNVATLAKLRTVSYELLSHCIP
ARTILKNLLFELINLAAGKTALIQEIVKVASTFDERLSLGQKSIFHLEGFVAKIMVAIDN
YS
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atgtctctatgggtagacaagtatagaccaaagacattatcgcaattgtcatatcatgag
agtataactcaaaacttgcgtgcactttccaagtctggagatttcccccatcttttagtt
tatggaccaagtggagcaggaaagaagacgagaatatactgtactttacatgaaatattc
ggatcctcagttgaaaagcttaaaattgatgtcaaaaactttgtaactacatccaatcgt
aaacttgaattcaatgttttgagttctccataccatttggaaataacaccttcagatatg
ggcaacaatgatcgtgttgtaattcaagatttgttgaaggatgtcgcctcaacagaacaa
gttgattttgggaatcaaaacaacagaagacacaggtttaaagtggtgatcatcaatgaa
gctgattcgttaagtagggatgcacaggcggctttgagaagaactatggaaaagtactca
tcaaatattagattgattttggtgtgtaattcgatatccaacattattgcccctattaaa
tcaagaactttattggtgagaattcctagtccatcagttgaaaatataagttcaattttg
ggtcacgttgctgagaaggagcatgtcaagttttcatccagcaatggacaagagatagct
caattctacagtcaagtggcgactacaagtcattgtaacttgagaagatcactattggca
tttgaaactatttacatgcaaaatgaaactatcaatgttaagcaattgcattcagtaatt
gtattagattgggaaattgttataaagaatatggccaaaacaattactaccagtaggaat
gtggcgacattggccaaattgagaactgtttcatacgagttgctatctcattgtattccc
gcaagaactattttgaagaatttattgtttgaattgattaatttggcagcgggaaagacg
gctttaatacaagaaatcgtgaaagttgcatctacttttgatgagagattgagtcttggc
caaaaaagtatcttccatttggaaggttttgtagcaaagattatggtcgcaattgataat
tacagttaa
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