Candida orthopsilosis: CORT_0B01310
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Entry
CORT_0B01310 CDS
T02488
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cot
Candida orthopsilosis
Pathway
cot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CORT_0B01310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0B01310
03041 Spliceosome [BR:
cot03041
]
CORT_0B01310
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
CORT_0B01310
Spliceosome [BR:
cot03041
]
Complex B
Other components
Prp19-related factors
CORT_0B01310
Complex C
CORT_0B01310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
NRDE-2
Sp-CxC
Motif
Other DBs
NCBI-GeneID:
14538516
NCBI-ProteinID:
XP_003867288
UniProt:
H8WZI2
LinkDB
All DBs
Position
2:complement(272847..274658)
Genome browser
AA seq
603 aa
AA seq
DB search
MISIDEIVKDEDLAYEIALIKDNKNLQTWESYYESKLNDALPAKLSLISRAVKVLPESEE
LWVNYLNLVDTNYESMLIKEIKQIIDQCLATQSKSLTIWLKILDILIEHAIDQVTYIRHK
FNQCLQNTPAKYHGKIWVLFIKFGDIVGGPTGVEIYSRLMKFISPKVLKSSDAGSPAELG
MTILDFIDKFIEFGDEGRVLKLYSEIVQSNEYSNLPKSPVQILFEYLDLLIDNSVKDKEF
ESQINEAIKKYPDQTTNLQLKLITFYKSKNDDYVDKIRSTYLTALKDCKTVYDFEKVYNE
FTKFEQQDIQSYLDSDTDPNTIILSQKLINFEELLNNRRLLMNDLQLRQDVNNVDYWFNR
FDIFKSQLNVLIQTIANAIKSINPLKIPRNCQHKLYEIWIKYAHIYASSSDFKTADFIYG
KSVQSQYPHPNELAELYISWSEMRLANDYFKESDAIELLENVLYRETGNDLHINYSDSSI
PVQKRIRKSIQLWDFYLDLVESFIESASDVIHIGKICDAYETMIKLKIATPKKLINFATF
LERWGYIEKSLSIYERCLHIFKDETIRSEIWRVYITKLKFIDHKERRKDIEERYMDVVKY
RGK
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgattagcatagatgagatagtgaaagatgaagatctagcatatgaaattgctctcatt
aaagacaacaagaacctacagacttgggaatcttattacgaatccaagttgaacgatgca
ttaccagcaaagctttctctcatctcgagagcggtcaaggtattacctgaatcggaagaa
ctatgggtcaattacttaaacttagtcgatacaaactacgaactgatgttgattaaggaa
ataaaacaaattattgaccaatgtctagccactcaatctaaatcattgaccatttggttg
aaaattcttgacattttaatagaacatgcaattgatcaagtcacatatatacgacacaaa
ttcaaccaatgtttgcaaaatacacctgctaagtatcatggtaaaatttgggtcttgttt
atcaagtttggtgatattgttggaggaccaaccggagttgaaatttattcacgattgatg
aaattcatcagtcctaaggtcctaaaaagtagtgatgcagggagcccagcagagcttggt
atgacaattttggactttatagataaatttatcgagtttggtgatgaaggacgcgttttg
aaattgtattccgaaattgttcaatctaatgagtattcaaatttgccaaagtctccagta
caaattttatttgagtacttggacttgcttatagacaactcagtgaaggataaggagttt
gagctgcagataaatgaagcaataaaaaagtatcctgatcaaacaacaaatctacaattg
aagttgataactttctacaaatcaaagaatgatgactacgtggataaaattagaagcaca
tatctaacggcactaaaagattgcaagaccgtgtacgactttgaaaaagtttataatgaa
tttaccaaatttgagcaacaagatattcaatcgtatcttgattcagacactgatcccaac
accatcatcctatcacaaaaattaatcaacttcgaagaactactcaataacagaagatta
ttgatgaatgacttgcaacttcgtcaagatgtaaataatgttgattactggtttaatcga
tttgatattttcaaatctcaattaaacgtactcattcaaaccattgcaaatgccattaaa
tcaatcaacccattgaagatccctcgtaattgtcaacataaactctatgaaatatggatc
aaatatgctcatatatatgcatcttcatctgattttaaaactgctgatttcatctatggc
aaatcagttcagtcacaatacccccatcccaatgaactagcagaactatacatcagttgg
agtgaaatgaggctcgccaatgactacttcaaagaactggatgcaattgaactcttagaa
aatgtattatatcgtgaaactggcaacgatctccatatcaactactccgattcatcaata
ccagtacaaaaacgaattcgaaaactgattcaactttgggacttttatcttgacttggtt
gaatcatttattgaatcagctagtgatgtaatccacattggtaaaatatgtgatgcttat
gaaacaatgattaaattgaaaattgccactcctaagaagcttatcaactttgcgacattt
ttggagaggtggggctatattgaaaaatccttgagtatatatgaacgatgcttgcatatt
ttcaaagatgagacgataagactggaaatttggagagtttatatcaccaagttgaagttt
attgatcataaagaaagacgaaaagatattgaggagaggtatatggacgtggtaaagtat
agaggtaaataa
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