Candida orthopsilosis: CORT_0B02200
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Entry
CORT_0B02200 CDS
T02488
Name
(RefSeq) Lsm7 protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cot
Candida orthopsilosis
Pathway
cot03018
RNA degradation
cot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CORT_0B02200
09123 Folding, sorting and degradation
03018 RNA degradation
CORT_0B02200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0B02200
03041 Spliceosome [BR:
cot03041
]
CORT_0B02200
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CORT_0B02200
mRNA degradation factors
5'-3' decay
Lsm complex
CORT_0B02200
Spliceosome [BR:
cot03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CORT_0B02200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Pox_VP8_L4R
Motif
Other DBs
NCBI-GeneID:
14538622
NCBI-ProteinID:
XP_003867376
UniProt:
H8X0P9
LinkDB
All DBs
Position
2:complement(join(457343..457479,457539..457764,457822..457833))
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AA seq
124 aa
AA seq
DB search
MPENSENKRQNQKQNRRRNQNNDRPRTEGPKREAILDLNKYKDEEIRVRFVGGRKVTGIL
KGYDQLMNLVLEDVQEQLRDPVIEGRYLDKTRELGLVVVRCTSLLTISPVKGSEIIDNPF
VAEH
NT seq
375 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaacagtgaaaacaagagacagaatcagaagcagaataggagaagaaatcaa
aacaatgacaggccaagaactgaagggccaaagagggaggctatactagatttaaacaag
tataaagacgaagaaatccgagtcagatttgttggagggagaaaggtaacggggattctc
aaagggtatgatcaattgatgaatttagttttggaggacgttcaagagcaactcagagat
ccagtaattgaaggtagatatcttgacaagactagagagcttggattggttgttgtcaga
tgcacaagtcttttgacaatttcacctgtcaaaggcagtgagataatagataaccccttt
gtagcggaacattga
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