Candida orthopsilosis: CORT_0B03940
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Entry
CORT_0B03940 CDS
T02488
Name
(RefSeq) mRNA cleavage and polyadenlylation factor
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cot
Candida orthopsilosis
Pathway
cot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CORT_0B03940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0B03940
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CORT_0B03940
U7-dependent histone pre-mRNA processing factors
CORT_0B03940
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
Motif
Other DBs
NCBI-GeneID:
14538584
NCBI-ProteinID:
XP_003867539
UniProt:
H8X162
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Position
2:complement(855577..858387)
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AA seq
936 aa
AA seq
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MFTFSLLTPSKGDHAFKVSLLTFENESRILADPSWNGIDPKAAKFMELHLQQTDAIIISH
STNEFISGYILLCITFPNIMSNIPVYSTLPVNQLGRISTVEYYRSSGILGPLLSNLVELD
EIDYWFDKFIIVKYQQNVTICDRKITMTPYNSGHSLGGTFWLLVKKIDRIIYAPSWNHSK
DAFLNSANFINSTSGNPHLALLRPTAFITATDLGSAMPHKKRCEKFLQLVDATLANGGSA
IIPTSISGRFLEVFHLVDEHLKGAPIPVYFLSYSGTKILSYASSLMDWMSSGFNNTWNSD
IGNNSLLPFNPSKVDLLLDPSELTQIPGAKIIFCAGLDFKNGDLSSKVFSYLCNDERTTV
ILTEKPPSANVEHGMGLSRGLYREWVKLSKERTGKVVDGTPVPLEKIINLDSWSQEEEVE
GPESIAFVNKITQKRKEKLMAKVRDQKRQNLLSTDAIDVEDSSDDEDDEEDEDKKAGEIF
DEEVQKEKTRVPLTKEVDELIQHEAFVMDNVKHNMENHLPIDIKVTHKLKPRQAMFPYSA
PKVTFDDYGQVIDAKDFERTDQVSHSKIIMEGKKKFDEKKQKWNTNDKTDKKKSQQTNKL
TPQEQVNQQLLQKYLDTLHKPMKRVQLGQRSSTSTQLRVRCGLAFVDLSGLVDLRSLGII
VQAVKPYNLILLPDERVSDELGLEQVEKFFEQQQNKQAIENTKKQILNSSRYLSLSAIRD
GLSTSTSPLSSGKLNVLVAREDEIVKIGVDSENGVIGLRNFEVNLDDAIVSTLKWQSVGD
NYNVAKLYGELVLVNDQESLEGPAQKKPKTLQDYINSNTQFSLKPIESDEALTKHRNDNI
FASTNDPKLLMVISNAPRLAIGNIRLPDLKKKLSSLNLNVEFKGEGTLVVNDVLAIRKIA
YGSLESDDSGDIVIDGNAGPLYYKVKECIKEMLAYV
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgttcacgttttcccttttgaccccaagtaaaggcgaccatgctttcaaagtttcgctt
ttgacatttgaaaatgaactgcggatactagcggacccttcgtggaatggaatagatccc
aaagcagctaaatttatggaacttcatttacaacaaacagatgcaatcatcatctcacac
tcaacaaatgaattcatcagtggatacatcttgctttgcataacatttccaaatatcatg
tcgaacataccagtttattcgacgttgcctgttaatcaattgggtagaatttcaaccgtg
gaatactacagatccctgggtattcttggaccactattatcaaaccttgtggagttggat
gaaattgattattggttcgataaatttatcattgttaagtaccaacaaaatgttacaatt
tgcgatcgaaaaattacaatgacgccgtacaattctggacattccttaggtggtacattt
tggttgttggtaaagaagattgatcgtataatttacgcaccaagctggaatcactccaag
gacgcttttttaaacagtgcaaatttcataaactctacgctgggtaatcctcatttggcg
ttactacgcccaacagctttcattactgccaccgacttgggatctgcaatgccgcataaa
aaacgttgtgagaaattcttgcaattggtagatgccaccttagccaatggcggctcagcc
ataattccaacatccatatcaggaagattcttggaggtgtttcatttagttgacgaacat
ttgaaaggtgcgccaatccccgtctactttctatcgtattcaggaaccaaaatattaagc
tatgcttcaagtttgatggattggatgagtctggggtttaacaacacatggaacagtgat
attggcaacaacagcttactacctttcaatcctagtaaggttgatttactattggacccc
tcggagttaacgcagatacctggggccaaaatcatcttctgtgctggtttagatttcaaa
aacggtgacctttcgagtaaagtgtttctgtatttatgtaatgacgaaagaacaactgtt
attttaactgaaaagccaccatctgcaaatgtagaacatggcatgggtttaagtagaggt
ttatatcgagagtgggtcaagttatctaaggaaaggacagggaaggttgtcgatggtacc
cccgtcccattggagaaaattatcaatttggatagttggtcgcaagaagaagaggttgaa
gggcccgaatcaattgcgtttgtgaataagataacccagaaaagaaaagagaagttaatg
gcaaaagtcagagatcagaaaagacaaaatttgttaagtacagatgcgatagatgttgaa
gattcctcagacgacgaagacgatgaagaagacgaagataagaaagctggtgaaatattc
gatgaagaggtgcagaaggagaaaactcgtgtaccattaaccaaggaggttgacgaattg
attcaacatgaagcgtttgttatggataacgtgaagcacaacatggaaaatcatttgccg
atcgatatcaaagtaactcataaattaaaaccgcgtcaagctatgttcccctactctgct
cctaaggttacattcgatgactatggtcaggttatagacgcaaaagatttcgaaagaact
gatcaggtttcccacagcaagatcataatggaaggtaagaagaaatttgacgaaaagaaa
caaaaatggaacacaaacgataaaacagacaagaaaaagagccaacagacgaacaagttg
acaccacaagagcaggtaaatcaacaattgttgcagaaatatttagacaccttgcataag
cccatgaagagggttcaattgggacagagaagctcaacaagtacccaattaagagtgaga
tgtggtttggcttttgttgatttatcgggtttggtagatttacggtccttgggtatcatt
gtgcaagcagttaaaccgtataatttaatactattaccagatgagagagttagtgatgaa
ttgggacttgaacaggttgaaaagttttttgaacaacagcaaaacaagcaagcaatagag
aatacgaaaaagcaaattttgaattcatcgaggtacttgtcattatcggcaattcgtgac
ggtctatcaacctctacatcaccactctcaagtggcaaacttaatgttcttgttgctaga
gaggatgaaattgtcaagattggggttgattctgaaaacggtgtcattgggttgagaaac
tttgaagtcaacttggacgacgcaattgtatccaccttgaaatggcaatcggttggtgat
aattataatgtcgccaaattgtatggtgaattggtgttggtaaatgatcaagaatccctc
gagggacccgcgcagaagaagccaaaaactttacaagactatatcaactcgaacactcag
ttttcattgaaaccaatcgaatccgatgaagctttgactaaacatagaaatgataatatt
tttgcatctaccaatgatccaaaattgttgatggtgatctcaaatgcaccgagattagcc
ataggtaacatccgcttacctgatttaaaaaagaagttgtcatcactaaacttgaatgtg
gaatttaaaggggaggggactttagtagtcaacgatgttttggcaatacgcaagatcgcc
tatggttccttggaaagtgatgatagtggggatatcgtcattgatggaaatgcaggaccg
ttgtattacaaagttaaggaatgcatcaaagaaatgttggcatatgtatag
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