Lodderomyces orthopsilosis: CORT_0B04780
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Entry
CORT_0B04780 CDS
T02488
Name
(RefSeq) Pds5 protein
KO
K11267
sister chromatid cohesion protein PDS5
Organism
cot
Lodderomyces orthopsilosis
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cot03036
]
CORT_0B04780
03400 DNA repair and recombination proteins [BR:
cot03400
]
CORT_0B04780
Chromosome and associated proteins [BR:
cot03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
CORT_0B04780
DNA repair and recombination proteins [BR:
cot03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
CORT_0B04780
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
HEAT
HEAT_2
Cnd1
CLASP_N
DUF6169
WHD_GTF3C1
NvfJ_N
HEAT_ULK4
HEAT_GCN1_C
Motif
Other DBs
NCBI-GeneID:
14538228
NCBI-ProteinID:
XP_003867623
UniProt:
H8X1E6
LinkDB
All DBs
Position
2:1032945..1036802
Genome browser
AA seq
1285 aa
AA seq
DB search
MMQPRRSLTTSSTMDVSSSSCSLQFDKRIISTIKSNISNKELITRLMELHEELSNLDDED
VDLSSLKSVSKDLVDKRLLNHPSIGVQAFACCCLSDILRLYAPNAPYSDEQLSVIFESFF
KQFSRIATTGKMERPQYYLQYVYLLKRLAETKSIILILDLHESQKLMKSLFDAFYSIGTK
QNFPRELETLVTDILSEVISESEAIPLDIIKMILNKFEIHGPNNQLLAGNITTPEFNFSL
AVCENNVDRMSRLVAQYFSEILYTNSNKLEIDHEQELEFQKRSENEFLKALDALKKIHHL
SVQLWTFVPSIMSSVICLVDDELNASDERVRALATTTIGKMLGSETYSSTVPLHKVNFFV
IHRSIWQNWLKKTNDVSHYVRTLWVNLIPGIFVNNQYLTNDISRILSDEFKKCMVDTDHR
VREAACVALSKIPYDIFITKVANKEILQILSQLIREKHKNIRSTSIQVLSSIYYNHTQHV
VDHDEVQSDQDLKNLINDIPNQILSLIYINDKSITALVDESFFEKLVPVSEPNTVKRVQK
LVSFYSVLNGKSKEAFTAILRRQSQIANVIENFLTIADECNKANSLDKENNPPSSELLKS
NLTKLEKILNWLCISFPDDYNTYSCLERLFKLNRARFYHLIRTCISSESDLNTINRAFKE
LLSKLADPKNIRCDDGANVTPAEMVYNTKLLILRGSPSLFNRSNVEELISYSKSSQREFK
AQANELLEQMSTITPEVFKHHVRALVELCMDQNETSKAGPLKTIYHFVKKFPESFPGEIL
FTESLVRLAVDGSPEEAKYSTKVLSLSDRKEVCFNDIIDKVYPLNFTDAHFGAHLSSIAE
LFLVDKFSISDKESTITEFLIKSVLLENTVTDDHQTYKLLAIRYFINSLKSYIDDPETAK
EKSAPVIKLLLSIIGNEGEIVNKTNETWPTPEPYKAKLRLTAGKYLLKMAKIPIYNEVIS
SSTMRKLCFLLNDKELSVRSQFSKKLRQYLATESISEKYLSLVFFIAVEQDPALKNENTL
WVKSMFKRSEVTKNLKFEKSLVRLIHNIVHHERFLSILNSDEEGSASGEDSRTLEAYSFA
TRFLTYYVQLIAKAENISLLYYLASRVKQHRDATIPSEEYEKLNKPQKVFNLYRIAELAQ
LVLKTYSDFKIWPIQTWTEKFKLPQGIYAPMASPSEAQSVVSQVFIHDGLQGKLVNLIKK
ETSDSKRKQTDNGVAVNTSKRPKPASTAVKRIRNKKSTRRIEKPSLNVAEPTRRSNRVKS
KVDYKDQIASEDESDSYMESESDFE
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagccacgcagatcattaacaacatcatctactatggatgtgagtagtagtagt
tgtagcttacaatttgacaagcgaatcattagcaccatcaaactgaatataagcaacaaa
gaattaatcactagactaatggaattgcacgaggagctatccaatttggatgatgaagat
gtcgatttatcctcactcaaactggtgagcaaagatcttgttgacaagagattgctaaat
catccaagtattggggtgcaagcatttgcttgctgttgtctatcagatatacttagactt
tatgcacccaatgccccttatctggatgaacaattgtcagttatttttgagtcatttttc
aagcagttttcaagaattgcaacaactgggaaaatggaaagacctcaatactatttacaa
tacgtgtatttgttgaagagattagctgaaacaaaatccataatcttgattcttgatctc
catgagtctcaaaaattgatgaagtctttatttgacgctttttacagcattggtactaag
caaaacttccctcgagaattggaaaccttggtgactgatattttgtcagaagtgatctct
gaatctgaagccataccacttgatatcatcaaaatgattttaaacaaattcgagatacat
ggaccgaataatcagttgcttgcgggaaacatcactacccctgagttcaacttttccttg
gctgtttgtgaaaacaatgtcgatagaatgtcaaggttggtggcacaatatttttccgag
atcctatacaccaactcaaataaattggaaatagatcatgaacaagaattagaatttcaa
aagagaagtgaaaacgagtttttgaaggctttggatgctttgaaaaagatccaccatttg
tcagtgcagctttggacattcgtcccttctattatgtcctctgttatttgcctagttgac
gatgaattgaatgcaagtgacgaaagggttcgcgctttggctacaacaactataggaaaa
atgttggggtcagaaacttatagctcgacagttccattacataaagtcaacttctttgtc
atacaccgatcaatttggcaaaactggctaaaaaaaaccaatgacgtatctcattatgtt
cgtaccttatgggtgaatctcattccaggcattttcgttaataatcagtatctcactaat
gacataagtcgtattctctcagacgaattcaaaaagtgtatggtggatactgatcacaga
gttagagaagcagcatgtgttgcccttagcaagataccgtatgatatattcatcaccaag
gttgctaataaagaaatattgcaaatcttatcacaattgatcagagaaaagcacaagaac
attaggtccacttcgattcaggtgttgagttcaatatactacaatcatacacaacacgtc
gtggatcacgacgaagtccaatcggatcaagatctcaagaatttgattaatgatatcccc
aatcaaatactatccttgatctacattaatgataaaagcatcactgctctagtggatgag
tcgttttttgaaaagctagttccagtttccgagccaaatacagtgaagcgagttcaaaaa
ttggttagtttttactctgttttgaatggaaaaagcaaagaggcatttactgctattttg
agaagacaaagccagattgcaaacgtaattgagaactttttgacaatcgctgatgaatgc
aacaaagcaaactctttagacaaagagaataatccaccatcatctgaacttctcaagtca
aacttgaccaaattagaaaagattttgaactggctttgtatttcatttcctgatgattac
aacacatattcctgtttagaaaggcttttcaaactcaatagagctcgattttatcatttg
atcagaacatgtatctcatcagaatctgatctaaacaccatcaacagggcattcaaggag
ttgttgagtaaacttgctgacccaaagaatattagatgtgatgatggtgcaaacgtcact
cctgctgaaatggtttacaacacaaagttgttgatattaagaggttcgccttcattattc
aatagatccaacgttgaagaacttatttcgtattcgaaactgtcgcaacgggaattcaaa
gcacaagccaacgagttgcttgaacagatgtcaaccattacacccgaagtatttaagcac
catgtcagagctttagtcgaattgtgcatggaccaaaatgaaacaagcaaagctggtccc
ctcaagactatataccactttgttaagaaattccctgaatcattcccaggagaaatttta
tttactgagctgttggtaagattggcagtcgatgggtcacccgaagaagcaaagtattcc
accaaagtgcttagtcttagtgatcgaaaggaagtttgcttcaatgacatcatcgacaag
gtttacccgttaaattttactgatgctcactttggtgctcatttaagcagcatagcagag
cttttcttggttgacaaattctctattagtgataaagagtcgacaattacagaattcttg
ataaagagtgtgttgcttgaaaacacagtcacagatgatcatcaaacatataagcttttg
gctatccggtatttcattaactcattgaaaagctacatagatgaccctgagacagccaag
gagaaatctgcccctgttataaaattgttactatcaataattggaaatgagggagaaatt
gtcaacaaaactaacgaaacctggcctacaccagagccctacaaagcaaaattgaggtta
actgcaggaaagtatttactaaagatggcaaaaatcccaatttacaacgaagtcatttcc
tcctcgactatgagaaagttgtgcttccttttgaatgataaggagctttcggtaaggtca
caattttcgaaaaagttgaggcaatatcttgctacagaatctatatcagaaaaatatctt
tctttggtcttttttatcgccgttgaacaagatcctgcattgaagaatgaaaacacatta
tgggtgaaatccatgttcaagagatcagaagtgaccaaaaatttgaaatttgagaagtcc
ttggttaggttgattcacaatatcgtccaccatgaacgatttctttcaatcttaaatagc
gacgaggaaggttcagcaagtggcgaagacctgagaaccctagaggcatattcatttgca
actcgtttcctcacctactacgtgcaattgatagctaaagctgaaaacatttccctactt
tattacttggccagtagagtcaaacagcatcgagatgccacaattccaagcgaagaatac
gaaaagttgaataaaccacagaaagtgttcaatttatatcgaattgctgagttggcccag
ttggtgttaaaaacatatagtgatttcaaaatctggcccattcaaacctggaccgaaaag
ttcaaactaccacagggtatttacgcgccaatggccagtccttcagaggctcaatctgtt
gtatcacaagtcttcatacatgatggcttacagggcaagttggtgaatttaatcaagaag
gagacttccgattccaaacgaaaacaaactgacaatggggttgccgtcaacacgtccaaa
cgcccaaagccagcatcaactgctgtcaaacgtatcaggaataaaaagagtactcgaaga
attgaaaaaccgagtcttaatgttgctgaacccacaagaaggagcaatagagtcaaaagt
aaagtcgactataaagaccaaattgcctcagaagatgaactggattcatatatggaatcg
gaaagtgacttcgagtga
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