Lodderomyces orthopsilosis: CORT_0B05970
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Entry
CORT_0B05970 CDS
T02488
Name
(RefSeq) endoribonuclease
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cot
Lodderomyces orthopsilosis
Pathway
cot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CORT_0B05970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cot03021
]
CORT_0B05970
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0B05970
Transcription machinery [BR:
cot03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CORT_0B05970
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CORT_0B05970
U7-dependent histone pre-mRNA processing factors
CORT_0B05970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_3
CotH
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
14538620
NCBI-ProteinID:
XP_003867743
UniProt:
H8WZW1
LinkDB
All DBs
Position
2:complement(1274145..1276454)
Genome browser
AA seq
769 aa
AA seq
DB search
MSEKTASFSNEENFKFFGLGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPYFDE
YDLSKVDILLVSHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGN
SRTEGGGGNDEGGNLYTDDDIFKSFDRIETIDFHSTMEVDGIRFTAYYAGHVLGACMYLI
EIGGLKVLFTGDYSREENRHLPSAEVPPVKPDVLITESTFGTGTLEPKAELEKKLTNHIH
ATITKGGRVLLPVFALGNAQELLLILDEYWEKNEDLQNVSVYYCSDLARKCMAVYETYTG
IMNDKIRLSSSSDDSKSNPFDFKYIKSIRNLSKFSDLGPSVVVATPGMLQAGVSRQLLEK
WAPEQKNLVILTGYSVEGTMAKDLLKEPQVIQSLNNPDLSIPRRIGIEEISFAAHVDFQQ
NSEFIDKVSPSRIILVHGDSVPMGRLKSALLSKYSSRKGTDKEVKVFNPRNCEELNIAFK
GLKIAKVLGSLAEAQLQALKQEIEEKITEADDATEDVKMEGGDDSKEQVNGTSNTFQPGQ
IVSGVLVSKDFELDLVQLQDLNEFTQLSTSIVKSKMNLKINANLPLVIWHLEQMFGYINI
INDDDNEWECVIMDVVDILVDRSKGPGIYISVEWINDNLMADSLADSIIAILYSIDSSPA
SVKMSSAQHSHNHQYTHIKQENENDASSTSKSDIANRIAQIQILLEAQFGEALEKLEDEK
AKVSIGKSVANIDYRTLKVECASKVLKDRIETIIKRGTVLTAPLALPPK
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagaaaacagcctccttttccaacgaggagaacttcaagttttttggactcgga
gggtgtaatgaagttggtcgatcatgtcatatcattgaatataaaaacaaggtgattatg
ttggatgctgggatgcatcctgcattgagtgggcatgcatcatttccgtattttgatgag
tacgatttatctaaagttgacattctattggtgagtcatttccatgtggaccattcggct
tcattaccttatgtcatgcaacaatcaaattttagaggcaaggttttcatgacacatgcg
actaaggcgatataccgttggttgatgcaagattttgtcagagtaacgtctattggaaac
tcgaggactgaaggaggtggtggaaacgacgaagggggaaacttgtacacggatgatgat
atatttaaatcatttgatagaattgagacaattgattttcactctacgatggaagttgat
ggaatcagattcacagcttactatgcaggtcacgttctcggggcttgcatgtacttgatt
gaaattggtgggttaaaagtacttttcactggtgattattcaagggaagaaaaccggcat
ttgccttctgcggaagtgccccctgttaagccagacgttttgatcacggagtcaactttt
ggtaccggtacattggagcccaaagcagaattggagaagaagctaaccaatcatatacac
gcaacaataaccaagggaggaagagttttattaccagttttcgctttgggtaatgcacaa
gagcttttattgattcttgatgaatattgggagaaaaatgaagatttacaaaatgtcagt
gtctattactgctctgatctagctaggaaatgtatggccgtttatgaaacctacacaggt
attatgaatgataaaatacggctctcatcatcttcagatgattctaaatctaacccattt
gactttaaatatatcaagtctatcagaaacctttccaagttttcagatttaggtccatct
gtagttgtagcaaccccgggaatgttacaagctggtgtttctagacaattgttggagaaa
tgggcaccagaacagaaaaatcttgttatattaacaggttattccgtagaaggaacaatg
gcaaaagatttgttaaaggaaccacaagtgatacaatcgttgaacaaccctgatttaagt
attccacgaagaataggaatagaagagatttcatttgctgcacatgtcgactttcaacaa
aactcagaattcattgataaggtgtctccctcaagaattattttggtgcatggagattca
gttcctatgggtagattgaagtcagctttattgagtaagtactcctcacgaaagggaacc
gataaagaagtcaaagtatttaacccgagaaattgcgaggagctaaatattgcattcaag
ggattgaaaattgctaaagtactcggttcacttgcagaggctcagttgcaagcgttgaag
caggaaattgaagagaaaattaccgaagctgacgacgctacagaagatgttaaaatggag
gggggagatgattcgaaagaacaggtaaatggaacatcaaacactttccaaccggggcaa
atcgtttctggagtccttgtctcaaaagactttgagttggatcttgttcaattacaagac
ttgaacgaatttacccagttatccacctccattgtgaaatcgaaaatgaatcttaaaatc
aacgcaaatttacctttggtgatttggcatttagagcaaatgtttggttacatcaatatt
atcaatgacgatgacaatgaatgggagtgtgtgattatggatgttgtagacattttagta
gatagatcaaaaggtcctggtatttatatatccgtggagtggattaatgacaacttaatg
gctgactcattggcagatagtataattgctatactatattcgattgattcatccccagca
tcggtgaaaatgtcatcagctcagcattctcataatcatcaatacacacatatcaaacaa
gaaaacgagaacgacgcctcatccacatccaagtcagatattgcgaatcgaatagcccag
attcagatacttttagaggcccaatttggtgaagctttagagaaattagaagatgaaaag
gcaaaggtttctattgggaagagtgttgcaaatatagactacaggactttgaaagtcgag
tgtgcttcaaaagtattgaaagaccgtatagaaactattatcaaacgtggtactgtgcta
acagcaccattggctttgccacctaaatag
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