Lodderomyces orthopsilosis: CORT_0B08600
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Entry
CORT_0B08600 CDS
T02488
Name
(RefSeq) Fal1 protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cot
Lodderomyces orthopsilosis
Pathway
cot03013
Nucleocytoplasmic transport
cot03015
mRNA surveillance pathway
cot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CORT_0B08600
09122 Translation
03013 Nucleocytoplasmic transport
CORT_0B08600
03015 mRNA surveillance pathway
CORT_0B08600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0B08600
03041 Spliceosome [BR:
cot03041
]
CORT_0B08600
03009 Ribosome biogenesis [BR:
cot03009
]
CORT_0B08600
03012 Translation factors [BR:
cot03012
]
CORT_0B08600
Enzymes [BR:
cot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CORT_0B08600
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CORT_0B08600
mRNA cycle factors
Stress granule specific factors
CORT_0B08600
Spliceosome [BR:
cot03041
]
Complex C
Other components
EJC/TREX
CORT_0B08600
Ribosome biogenesis [BR:
cot03009
]
Eukaryotic type
90S particles
Helicases
CORT_0B08600
Translation factors [BR:
cot03012
]
Eukaryotic type
Initiation factors
eIF-4
CORT_0B08600
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
NAT10_TcmA_helicase
AAA_22
AAA
nSTAND1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
14539139
NCBI-ProteinID:
XP_003867999
UniProt:
H8X052
LinkDB
All DBs
Position
2:complement(1783765..1784964)
Genome browser
AA seq
399 aa
AA seq
DB search
MDEFDRDIDKELEFSHKSTKGIKVHRTFESMKLKPELLKGIYAYGFEAPSAIQSRAIMQI
IAGRDTIAQAQSGTGKTATFSIGMLEAIDSKSKDCQALILSPTRELAIQIQNVVQHLGDY
MNIHTYACIGGKNVGMDIKKLQQGQQVVSGTPGRVLDIIRRRNLSTRHIKILILDEADEL
FTKGFKEQIYEIYKQLPYDTQVVVVSATLPPEVLEMTSKFTTDPVKILVKRDDVSLVGIK
QYYVQCEQEDWKFDTLCDLYDNLTITQAVIFCNTKMKVNWLTDQMRKQNFVVSSMHGDMK
QDERDSIMSDFRTGNSRVLISTDVWARGIDVQQISLVINYDLPNDKENYIHRIGRSGRFG
RKGTAINLITRGDLPTMREIESYYSTRIREMPMNINDVM
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtttgacagagatattgataaggagttggaatttagtcataaatcaacaaag
gggatcaaggttcaccgtacttttgaaagtatgaaactcaaacctgaactattaaaaggt
atttatgcatacggttttgaagccccatcggcaatccaatccagggcaattatgcaaatt
atagctggtcgggatacaattgctcaagcacaatcaggaactggtaaaactgctacattc
tcaattggtatgttggaagccattgactcgaaatcgaaagattgtcaggcattaatatta
tcaccaacaagagagttggctattcagattcaaaatgttgtacagcatcttggtgattat
atgaatattcatacatacgcttgcataggaggtaagaatgtgggaatggatattaaaaag
ctacaacaaggccaacaagttgttagtggaactccaggtagagtattggatatcattagg
cgaagaaatctctccacaaggcatataaagattttgatcctagatgaggcagatgagcta
tttacgaaaggcttcaaagaacagatatatgaaatctacaaacaacttccatatgatacg
caagttgtggtagttagtgctaccttaccaccagaagttttggagatgacgagcaaattc
accaccgaccctgtgaagattttagtcaagcgagacgatgtatctttagtgggtatcaaa
cagtactatgtgcaatgtgaacaagaagattggaagtttgataccttgtgtgacctttac
gacaacctaaccatcacacaagccgtcatattctgcaatacaaagatgaaggttaattgg
ctcaccgatcaaatgaggaaacaaaactttgtagtgctgtctatgcacggagacatgaaa
caagatgaaagggactcgattatgagtgactttagaacaggcaattcacgtgttttgatt
tcaactgatgtctgggctagaggtatcgatgtgcaacaaatatctttagtgataaactat
gatttaccaaatgacaaagaaaattacattcacagaataggtcgatcgggaaggtttggt
agaaaaggtacagcaataaacttgataaccaggggtgacctacccacaatgagggagatt
gaaagctattactcaacaaggatcagggagatgcccatgaacattaatgatgttatgtaa
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