Lodderomyces orthopsilosis: CORT_0C01210
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Entry
CORT_0C01210 CDS
T02488
Name
(RefSeq) Prp19 protein
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
cot
Lodderomyces orthopsilosis
Pathway
cot03040
Spliceosome
cot04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CORT_0C01210
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
CORT_0C01210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cot03041
]
CORT_0C01210
04121 Ubiquitin system [BR:
cot04121
]
CORT_0C01210
03400 DNA repair and recombination proteins [BR:
cot03400
]
CORT_0C01210
Enzymes [BR:
cot01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
CORT_0C01210
Spliceosome [BR:
cot03041
]
Complex B
Other components
Prp19 complex
CORT_0C01210
Complex C
Prp19-CDC5 complex
CORT_0C01210
Ubiquitin system [BR:
cot04121
]
Ubiquitin ligases (E3)
U-box type E3
CORT_0C01210
DNA repair and recombination proteins [BR:
cot03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
CORT_0C01210
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Prp19
WD40_Prp19
U-box
Beta-prop_IFT122_1st
WDR55
WEMBL
TSNAXIP1_N
Beta-prop_WDR36-Utp21_1st
ABC_tran_CTD
zf-Nse
ZapB
DUF1542
Motif
Other DBs
NCBI-GeneID:
14539780
NCBI-ProteinID:
XP_003868402
UniProt:
H8X2F1
LinkDB
All DBs
Position
3:254520..255995
Genome browser
AA seq
491 aa
AA seq
DB search
MICAISGEEVKDPIVSPKSGAVFERKYIEHFVSTNGTDPINNETLTIDELIPLRVQASFA
SNSAQPSNTFIPNILSTLQSEYNAMVAEISTLRKNLESLQQELSVSLYRQDAAINVATRA
IKERDEAREALEKLTTSVKTKINIDENGEKADQMEEDDGVHNISDIHPARDELFKSHKAL
KVKSPYKSDKLSVVQDRVISKVFGVNVDFVLFCSHVKILIGAHKNEVLQYDVKSETLNVW
KSGLKTIGQIVYNNNGILAAVTGTKISFSTGDTFTMKRKVLSINTHPSLNLFVITSAGNW
YVSNTKEIIATHPTDSDLIKGDIHGDGEIFAAYNGEKIKLMSLVSGDELAAYDIENKHVQ
QISFAANGYWLLVLSTSDNSNTIQVFDLRKNLEVNKLEIQKDRRVDKFIIDPSSSLIIVE
TDSNYSSYSYSKKTKSWSEIESLDLAASNNEKLFLYSNGEDVVNDGDVKFVHYNPDADNL
IVEKLAEEEAI
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgatttgcgcaatatcaggtgaggaggtcaaggatccgattgtttcgcccaaaagtggg
gctgtattcgaaaggaaatacattgaacattttgttagtacaaatggtacggatcctatt
aacaatgaaacattaacaattgatgaactcataccattgagagttcaagccagtttcgca
tccaatagtgctcagccatccaatacatttatacctaatattttatccacattgcaaagc
gaatacaatgccatggttgcagaaatttccacacttcgaaaaaatcttgagtcattacaa
caagaattgagcgttagtttatatcgacaagatgctgcaattaatgtggcaaccagagct
ataaaagaaagagatgaagcaagggaagcattggagaaattgactacttcagtaaagaca
aaaattaatatcgatgagaatggagaaaaagcggaccagatggaggaagatgatggtgtg
cacaatatcagtgatatacatcctgcaagagacgagctattcaagtcacacaaagccttg
aaagtgaaatcgccttacaagctggataagctttcagttgtacaggatagggtgattagt
aaagtatttggtgtaaacgttgacttcgtcttgttttgttctcacgtcaagatcctcatt
ggtgctcacaaaaatgaagttttgcagtatgatgtaaagagtgaaacattgaatgtatgg
aaatcggggttgaaaacaattggccaaattgtgtacaataataatggtattctcgcggcg
gtaacggggaccaaaatatcgttttcaacgggtgatacatttacgatgaaaaggaaggtc
ttgtcaattaacactcatccttcattgaatttatttgttataacgagtgcaggtaattgg
tatgtgtcaaacacaaaggaaatcatagcgacgcatccaactgactcagaccttatcaaa
ggtgacatccacggggatggagagatttttgctgcttataatggagaaaagataaagttg
atgagcttagtatctggagatgaacttgctgcgtatgacattgaaaacaaacacgtgcaa
cagatttcgtttgctgctaacgggtactggctactagtactatctacatccgacaattcc
aacacaatacaagtgtttgatttgaggaaaaatctcgaagttaacaagttggaaattcaa
aaagataggcgcgtagataaatttattattgatccatcgtcaagtttgattatcgttgag
actgattcgaactacctgtcttattcttacctgaagaaaacaaaaagctggagcgaaata
gagtcattggatttagctgcttccaataatgaaaaattgtttctctattccaatggtgag
gatgtggtgaatgatggagacgtgaaatttgtgcactataaccccgacgcagataatttg
attgtggaaaagttagctgaagaggaagcgatatag
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