Lodderomyces orthopsilosis: CORT_0C02040
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Entry
CORT_0C02040 CDS
T02488
Name
(RefSeq) Pub1 protein
KO
K13201
nucleolysin TIA-1/TIAR
Organism
cot
Lodderomyces orthopsilosis
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0C02040
03041 Spliceosome [BR:
cot03041
]
CORT_0C02040
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
CORT_0C02040
Spliceosome [BR:
cot03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
CORT_0C02040
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
RRM_10
RRM_MUD2_C
Nup35_RRM_2
Cas_Cas2CT1978
RRM_7
BRAP2
Motif
Other DBs
NCBI-GeneID:
14539608
NCBI-ProteinID:
XP_003868484
UniProt:
H8X2N3
LinkDB
All DBs
Position
3:complement(435411..436691)
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AA seq
426 aa
AA seq
DB search
MSENEQIEAAQTSPDQRTETNEQENKMTQEDVKEDVKEESTTPVTPASATEGGRETSNKI
LYVGNLPKSASEEQISKLFSVSKPIKSIKLLNDKNKLGFNYAFIEFDENQDADMALSTLN
GKLLNNCEIKVNWAYQSATIASNSTPEDPTYNVFVGDLSSEVNDEALKKAFNKFDSFKEA
HVMWDMQTSRSRGYGFVTFGKQEDAELALQTMNGEWLGGRAIRCNWAAHKQSNNRDYANS
HGLRNHNRYNHRQFRPYNGKNFNTYHSNQYSSNGSQHIAPGLIIPELNLSNGSLPLGSQQ
IVNSPPNGLNGNAQQTGNITVMSPQSYDIVLRQTPSWQTTVYLGNIAHVTQQQEMIPLLQ
NFGFIVDFKFHPEKGCAFVKYDSHERAALAIIQLAGFNLNGRPLKCGWGKERPPQYQNRA
TSYQGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaacgagcaaatagaggcggcacaaactagcccagatcaacgaactgaaacc
aatgaacaggaaaacaagatgactcaagaggatgtaaaagaggatgtaaaagaggaatca
actacgccagttacccctgcttctgccactgaaggtggacgtgaaacatccaacaagatt
ttatatgtgggaaacttgcccaaatcggcgtcggaagagcaaattagtaaactattttcc
gtttccaaaccaattaaatcgatcaagttgttgaatgacaagaacaagcttggctttaat
tatgcatttattgaatttgatgaaaatcaggatgccgatatggcattgagtactttaaat
ggaaaattactcaacaattgtgaaatcaaggtcaattgggcgtatcagtctgctacaata
gcaagtaatagtactccagaggaccctacgtataatgtttttgttggagatttgagctct
gaggtcaatgacgaagcattaaagaaagcgtttaacaaattcgattccttcaaagaggcg
catgttatgtgggatatgcaaacttcacggtctcgaggctatgggtttgtaacatttggc
aagcaagaagacgctgaattggcccttcaaacgatgaatggcgaatggttaggtggtaga
gccattagatgtaattgggcagcacacaaacaatcaaacaatcgagactacgctaactct
catggattgaggaatcacaaccgttataaccatcgacaatttagaccgtacaatggaaaa
aatttcaacacttatcatagtaatcaatactcaagcaatggcctgcaacatatagcccca
gggttaataataccagagttgaatttgtcgaatggaagcttgccattaggatcacaacaa
attgtcaattccccaccaaatggcctcaacggaaatgctcaacaaacgggaaacataaca
gtaatgtcaccacagtcatacgacattgtattaaggcagacaccctcatggcaaactaca
gtttacttaggaaatattgctcatgttacacaacaacaagaaatgattcccttgttgcaa
aatttcggattcatagtagattttaaatttcacccagaaaaaggatgtgcatttgtgaaa
tatgattcacatgagagagctgctttagcaattattcaactagctgggttcaacttgaat
ggtagacctttgaaatgtggatggggtaaggagagaccacctcagtatcaaaatagagcc
acgagttatcaaggtcggtaa
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