Lodderomyces orthopsilosis: CORT_0C03810
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Entry
CORT_0C03810 CDS
T02488
Name
(RefSeq) Yra1 protein
KO
K12881
THO complex subunit 4
Organism
cot
Lodderomyces orthopsilosis
Pathway
cot03013
Nucleocytoplasmic transport
cot03015
mRNA surveillance pathway
cot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CORT_0C03810
09122 Translation
03013 Nucleocytoplasmic transport
CORT_0C03810
03015 mRNA surveillance pathway
CORT_0C03810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0C03810
03041 Spliceosome [BR:
cot03041
]
CORT_0C03810
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CORT_0C03810
TREX complex
CORT_0C03810
Spliceosome [BR:
cot03041
]
Complex C
Other components
EJC/TREX
CORT_0C03810
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CORT_0C03810
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PTP3_helical
RRM_11
RRM_3
RRM_PARP14_3
FoP_duplication
Na_H_antiport_2
Motif
Other DBs
NCBI-GeneID:
14539277
NCBI-ProteinID:
XP_003868660
UniProt:
H8X3W8
LinkDB
All DBs
Position
3:join(870517..870813,871581..871958)
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AA seq
224 aa
AA seq
DB search
MSASLDKSLDDIISSSKKSFKSRRPSAKIGGARGNQNKVGKKLVGNKTKKTATFKRPNGP
KPAAATTAAAAAVPAFDLSYATKVNVTGLPKDLKQDNIREFFQSQVGGVQTVALSYNERG
QFKGVATVIFRSNKNAALAVEKYHGASIDGGKGKLSLELIIDTTKKPLAARIAAKPVQRA
QAAKAIENKKKLLVKKAKKPAKKPQQKKKTVEELDQEMKDYFDN
NT seq
675 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcctcattagacaaatcattagatgatatcatttcatcatcaaaaaagtctttt
aaatctagaagaccaagtgctaaaattggtggtgccagaggtaatcaaaacaaagttggg
aagaagttagttggaaacaagaccaaaaagactgccactttcaaaagaccaaatggtcca
aaacctgctgctgctactactgccgctgctgctgctgttccagcttttgatttgtcttat
gctacaaaagtcaatgtaactggtttaccaaaggatttgaagcaagacaacattagggaa
ttttttcaatcacaagttggtggtgttcaaaccgtggccttaagttataacgaaaggggc
caattcaaaggtgttgccactgtgattttcaggtccaacaagaatgccgctttggccgtt
gaaaagtaccatggtgcttctatcgatggtggtaagggtaaattatctttggaattgatt
attgataccacgaagaaaccacttgccgctagaattgctgctaaaccagtgcaaagagca
caagcagctaaggctatcgagaataagaagaaattattggtcaagaaggcaaagaagcct
gccaagaaacctcaacaaaagaagaagactgttgaggaattggaccaagagatgaaggac
tacttcgacaactaa
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