KEGG   Lodderomyces orthopsilosis: CORT_0C03810
Entry
CORT_0C03810      CDS       T02488                                 
Name
(RefSeq) Yra1 protein
  KO
K12881  THO complex subunit 4
Organism
cot  Lodderomyces orthopsilosis
Pathway
cot03013  Nucleocytoplasmic transport
cot03015  mRNA surveillance pathway
cot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CORT_0C03810
  09122 Translation
   03013 Nucleocytoplasmic transport
    CORT_0C03810
   03015 mRNA surveillance pathway
    CORT_0C03810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cot03019]
    CORT_0C03810
   03041 Spliceosome [BR:cot03041]
    CORT_0C03810
Messenger RNA biogenesis [BR:cot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CORT_0C03810
    TREX complex
     CORT_0C03810
Spliceosome [BR:cot03041]
 Complex C
  Other components
   EJC/TREX
    CORT_0C03810
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CORT_0C03810
SSDB
Motif
Pfam: RRM_1 PTP3_helical RRM_11 RRM_3 RRM_PARP14_3 FoP_duplication Na_H_antiport_2
Other DBs
NCBI-GeneID: 14539277
NCBI-ProteinID: XP_003868660
UniProt: H8X3W8
LinkDB
Position
3:join(870517..870813,871581..871958)
AA seq 224 aa
MSASLDKSLDDIISSSKKSFKSRRPSAKIGGARGNQNKVGKKLVGNKTKKTATFKRPNGP
KPAAATTAAAAAVPAFDLSYATKVNVTGLPKDLKQDNIREFFQSQVGGVQTVALSYNERG
QFKGVATVIFRSNKNAALAVEKYHGASIDGGKGKLSLELIIDTTKKPLAARIAAKPVQRA
QAAKAIENKKKLLVKKAKKPAKKPQQKKKTVEELDQEMKDYFDN
NT seq 675 nt   +upstreamnt  +downstreamnt
atgtccgcctcattagacaaatcattagatgatatcatttcatcatcaaaaaagtctttt
aaatctagaagaccaagtgctaaaattggtggtgccagaggtaatcaaaacaaagttggg
aagaagttagttggaaacaagaccaaaaagactgccactttcaaaagaccaaatggtcca
aaacctgctgctgctactactgccgctgctgctgctgttccagcttttgatttgtcttat
gctacaaaagtcaatgtaactggtttaccaaaggatttgaagcaagacaacattagggaa
ttttttcaatcacaagttggtggtgttcaaaccgtggccttaagttataacgaaaggggc
caattcaaaggtgttgccactgtgattttcaggtccaacaagaatgccgctttggccgtt
gaaaagtaccatggtgcttctatcgatggtggtaagggtaaattatctttggaattgatt
attgataccacgaagaaaccacttgccgctagaattgctgctaaaccagtgcaaagagca
caagcagctaaggctatcgagaataagaagaaattattggtcaagaaggcaaagaagcct
gccaagaaacctcaacaaaagaagaagactgttgaggaattggaccaagagatgaaggac
tacttcgacaactaa

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