KEGG   Lodderomyces orthopsilosis: CORT_0D00340
Entry
CORT_0D00340      CDS       T02488                                 
Name
(RefSeq) Smd1 protein
  KO
K11087  small nuclear ribonucleoprotein D1
Organism
cot  Lodderomyces orthopsilosis
Pathway
cot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CORT_0D00340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cot03041]
    CORT_0D00340
   03032 DNA replication proteins [BR:cot03032]
    CORT_0D00340
Spliceosome [BR:cot03041]
 Complex A
  U1 snRNP components
   Sm proteins
    CORT_0D00340
  U2 snRNP components
    CORT_0D00340
 Complex B
  U1 snRNP components
    CORT_0D00340
  U4/U6.U5 tri-snRNP components
    CORT_0D00340
 Complex C
  U2 snRNP components
    CORT_0D00340
DNA replication proteins [BR:cot03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     CORT_0D00340
SSDB
Motif
Pfam: LSM SM-ATX DUF5030
Other DBs
NCBI-GeneID: 14540143
NCBI-ProteinID: XP_003869020
UniProt: H8X5W9
LinkDB
Position
4:40682..41032
AA seq 116 aa
MKLVRFLMNIPNSTNQPVTVELKNGNIINGTLLSCTPSMNLNLKNVKLQQKYQDPILLQY
INVRGNQIRQILLPEDLNIDSVLEKSQTKIKGQGAGPSAKPVKRGGLRGRGRGRGR
NT seq 351 nt   +upstreamnt  +downstreamnt
atgaaattggtacgatttttgatgaacatacccaactcaactaaccaaccagttacagtt
gaattgaagaatgggaacataataaatgggacgcttttgtcatgtacgccgctgatgaat
ctaaacttaaagaatgttaaactacaacaaaagtatcaagatccaatcttgctacaatat
attaatgttagaggaaatcagataagacagattttgctacctgaagatttaaacattgac
agtgtgttagagaaatctcaaacgaagataaagggccaaggggccggtccaagtgcaaaa
ccagtcaaacgaggaggattaagaggaagaggacggggaagagggcgttag

DBGET integrated database retrieval system