KEGG   Candida orthopsilosis: CORT_0D01360
Entry
CORT_0D01360      CDS       T02488                                 
Name
(RefSeq) Rpb5 protein
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
cot  Candida orthopsilosis
Pathway
cot03020  RNA polymerase
cot03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CORT_0D01360
  09124 Replication and repair
   03420 Nucleotide excision repair
    CORT_0D01360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cot03021]
    CORT_0D01360
   03400 DNA repair and recombination proteins [BR:cot03400]
    CORT_0D01360
Transcription machinery [BR:cot03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     CORT_0D01360
  RNA polymerase III system
   RNA polymerase III
     CORT_0D01360
  RNA polymerase I system
   RNA polymerase I
     CORT_0D01360
DNA repair and recombination proteins [BR:cot03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CORT_0D01360
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Sof1 AAA_3 SH3_2
Other DBs
NCBI-GeneID: 14540352
NCBI-ProteinID: XP_003869121
UniProt: H8X4P2
LinkDB
Position
4:join(231045..231119,231170..231739)
AA seq 214 aa
MDDNDRAISRLFRTYKTVKEMVKDRGYYISQEELEMTLEQFRSKVCNSMGEPQRKLMCFQ
ATPNAEQLEKFPDMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSVGIFIYQNGITPSAN
KLIPTVQPATIETFQENDLIVNITHHELVPKHIKLSRDEKKELLERYRLKESQLPRIQRE
DPVARYLGLKRGEVVKIIRRSETSGRYASYRICL
NT seq 645 nt   +upstreamnt  +downstreamnt
atggacgacaatgacagagccatctcccgtttgtttaggacgtacaagacggtaaaagaa
atggtcaaggatagaggctattacatatcccaagaagaactcgaaatgactttggagcag
tttaggtccaaggtatgtaactccatgggagagccacaacgtaaactcatgtgcttccaa
gccacgcctaatgctgaacagttggagaaattccctgatatgggatccctttgggttgaa
ttttgtgacgaggctagtgttggtatcaaaacgatgaggaatttctgtatacatataagt
gagaaaaactttagtgtcggtatattcatctatcaaaatggtataactccaagtgcaaac
aaattgatcccgactgtgcagccagcaacaattgaaactttccaagagaatgatttgatt
gtaaatataactcatcatgaattggtaccaaaacatatcaagttgagtagggacgaaaaa
aaggagttgttggagagatatagattaaaggagtcacagttgccgcgaattcaaagagaa
gacccagttgctagataccttgggttgaaaagaggtgaagtggtgaaaattattcgaaga
tcggaaacttctggacgttatgcatcatatagaatctgtttgtaa

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