Candida orthopsilosis: CORT_0E02230
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Entry
CORT_0E02230 CDS
T02488
Name
(RefSeq) Sub2 TREX complex component
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cot
Candida orthopsilosis
Pathway
cot03013
Nucleocytoplasmic transport
cot03015
mRNA surveillance pathway
cot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CORT_0E02230
09122 Translation
03013 Nucleocytoplasmic transport
CORT_0E02230
03015 mRNA surveillance pathway
CORT_0E02230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0E02230
03041 Spliceosome [BR:
cot03041
]
CORT_0E02230
Enzymes [BR:
cot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CORT_0E02230
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CORT_0E02230
Spliceosome [BR:
cot03041
]
Complex C
Other components
EJC/TREX
CORT_0E02230
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CORT_0E02230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Ned1_M
CMS1
Motif
Other DBs
NCBI-GeneID:
14540940
NCBI-ProteinID:
XP_003869942
UniProt:
H8X7M5
LinkDB
All DBs
Position
5:complement(join(481879..482957,483231..483456))
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AA seq
434 aa
AA seq
DB search
MSHEGQEELLDYSDSEEIAVPTTTQTGGDSEATNDKEADKKGSYVGIHATGFRDFLLKPE
LLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEIS
TLVICHTRELAYQIKNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKNKDTCPHIVVATP
GRLHALVQDKAIRLNNVKSFVIDECDKVLEAIDMRRDVQDIFRATPHQKQVMMFSATLSQ
DIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKEKNRKLSDLLDSLEFNQVIIF
VKSTQRANELNKLLCACNFPSIAVHSGIPQEERIERYRSFKEFNKRICVSTDVFGRGIDI
ERINLAINYDLPNEADQYLHRVGRAGRFGTKGLGISFVSSKEDEEVLEKIQSRFDVKITE
FPEEGVDPSTYMNT
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaaggtcaagaagaattgttagactattctgactccgaagaaattgctgtg
ccaaccaccacccaaacaggaggtgacagcgaagctaccaatgacaaagaagctgataaa
aagggttcttatgttggtattcacgccaccggtttcagagactttttattgaagcctgag
ttgttgagagctattggagattgtggtttcgaacatccgtcagaagtccaacaggtctgt
atccctcaatctattttgggtaccgatgttttatgtcaagccaaatccggtttgggtaag
actgccgtttttgttttgtccactttacaacaattggacccagttccaggtgaaatctct
actttggtcatctgtcatacaagagaattggcttatcaaatcaagaacgaatatgctagg
ttctccaagtatatgccagatgtcaagactgaagttttctatggaggtactccaatcaag
agagatattgaaaagttgaaaaacaaggatacctgtccacacattgttgttgctactcca
ggtagattacatgctttggttcaagacaaggctatcagattaaacaatgtcaagtcattt
gtgattgatgagtgtgataaagtcttagaagccattgacatgagaagagatgttcaagac
atcttccgtgccacaccacaccaaaaacaagttatgatgttttcagctaccttgtctcaa
gatatccgtccagtttgtaagaaattcatgcaaaacccattggaaatttatgttgatgat
gaagccaagttgaccttgcacggtttgcaacaatactacatcaaattggaagaaaaagaa
aagaacagaaaattatcagatttgttggattctttggagttcaaccaagttatcattttt
gtcaagtccactcaaagagcaaatgaattgaacaaattgttgtgtgcttgtaacttccct
tctattgctgttcactctggtatccctcaagaagaaagaattgaaagatatagatctttc
aaggagttcaacaagagaatctgcgtttcaaccgatgttttcggtagaggtatcgatatt
gaaagaatcaacttggctatcaactatgatttgccaaacgaagctgatcagtatttgcac
agagtcggtagggctggtagattcggtaccaaaggtttaggtatctcttttgtttcctca
aaagaagatgaagaagttttagaaaagattcaaagtagattcgatgtcaagattacagaa
ttccctgaggaaggtgttgatccatcaacctacatgaacacttag
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