Candida orthopsilosis: CORT_0E04310
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Entry
CORT_0E04310 CDS
T02488
Name
(RefSeq) Tfb1 protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cot
Candida orthopsilosis
Pathway
cot03022
Basal transcription factors
cot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CORT_0E04310
09124 Replication and repair
03420 Nucleotide excision repair
CORT_0E04310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cot03021
]
CORT_0E04310
03400 DNA repair and recombination proteins [BR:
cot03400
]
CORT_0E04310
Transcription machinery [BR:
cot03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CORT_0E04310
DNA repair and recombination proteins [BR:
cot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CORT_0E04310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
14541080
NCBI-ProteinID:
XP_003870148
UniProt:
H8X789
LinkDB
All DBs
Position
5:complement(962188..964179)
Genome browser
AA seq
663 aa
AA seq
DB search
MDIIRGACSKDKVGGMVYIREDIVPSMLEWKAIEDERNTVAIPLNKLVGLQVSKESNPKM
MLQIIYKLDDQEEPTKMKLHFNNRPTMNNIKDALQTIVARSRTRVEGSLTPTPSTEVSSR
LGSSAGTPGTNESGTSTPGASSISSAFNLSHDQLTDASLLKNFDLQQKLLLEDKDLRNTF
TKSVMQFKLSPTMFWSSRINQLRTFALTISQHRGPYNVLSTIKPVATSDNQVNVNVTRST
INEIFDIYPIIKKAFTDLVPQKLSEGEFWSRFFNSKLFRRLRGDKIGLYSGRGDVILDKY
LYIDEDSLNEEVAQNKDGEEGNSSKRQKLNEEDKTSSNSFLNESPVSKFLDLFGNEQDNS
QKLGNRPDMTMRYEDDATKALHLKSGSTKENEMIILMKNMNKLSSKMMSMSSVENPAKPE
NTVDGLSAPEVNEYEEELDLHDLNVVNDAQYVKLSINTNNIKDRTLDVAEGETIDIEMND
ADLINYLQNQIPKESVIDLSDTFKGKEEDIGKTSAEISQLVRHNFKTFKSINKEDSMSSL
KPHNIIPETMYQEIITYNITIVEFLSHFWKLFLNGNNPTQLKKIFTSLKNCQNSLTEFKG
KSLAHLDGIDIVASNEKLKEKIHKDFDACLEPMEMSLGTALRKYAEAVKNANAREQNGVE
SQS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggacattatacgaggtgcttgctccaaagataaagttggtggaatggtctatatacgg
gaggatattgtcccatcaatgcttgaatggaaagctattgaagacgaaaggaatacagta
gcaataccattgaataaacttgttggcctacaagtctcaaaagaatcaaatcccaagatg
atgttgcaaataatttacaagttggatgatcaagaagagccaacaaagatgaaacttcat
ttcaacaatcgacctacaatgaataacattaaggacgcgttgcaaacaattgttgctaga
tcaaggaccagagttgaaggatcattgactccaacccctctgactgaagtatcgagtcga
ctaggatcttctgctggtacacctggcacaaatgaatcaggtacttcaacacctggtgct
tcatccatttcaagtgcattcaatctatcgcatgatcaattaactgatgctagtttgcta
aaaaactttgatctacagcagaaactattgttagaggataaggatctaaggaataccttc
actaaatcagtaatgcaatttaaactatcaccaacaatgttttggtcaagtcgaataaat
caattgcgtacgtttgcattaacaatatctcaacatcgaggtccatacaacgtgttaagt
actatcaaacctgtggcaacttctgacaatcaagtgaatgtgaatgttacacgcagtacc
attaatgaaatatttgacatttatccaattataaagaaagcatttactgatttggtaccg
caaaagctactggagggtgaattctggtctcgttttttcaattctaaattgtttcgaagg
ttgagaggagataaaattgggttatacagtgggagaggagatgttattttggacaagtat
ttgtatattgacgaggatagtttgaatgaggaagtagcacaaaataaagatggagaagag
ggaaattcttccaagaggcagaaacttaatgaagaggataagactagtctgaacagcttc
ttgaatgagtcaccagtgagcaagtttcttgatttgtttggtaatgagcaagataattct
caaaaattgggtaatcgacccgatatgacaatgagatacgaggatgatgcaacaaaagca
ctacatttaaagtccggctcaaccaaggagaatgaaatgattattttaatgaagaatatg
aacaagttatcttccaaaatgatgagtatgagttcggttgaaaaccctgctaaaccagaa
aacacagtggacggcttatcagctccggaagttaatgaatatgaagaggagttggatttg
cacgatttgaacgtggttaatgacgctcagtatgtgaagttgagtatcaacaccaacaat
atcaaggatcgcacacttgacgtcgctgagggtgaaaccatcgacatcgaaatgaatgat
gctgatttgataaattacttgcaaaatcagattccaaaagagtcagtaatcgacttgtca
gacacattcaagggcaaagaagaagacattggcaaaacgtcggctgaaatttcacagctt
gttagacacaatttcaagacattcaaactgataaataaagaggattcgatgtcctcgtta
aaacctcacaacatcattcccgaaaccatgtatcaagaaataatcacctacaatataacc
attgtggaatttttgtcccatttttggaaattgtttctcaacggaaacaaccctacccaa
ttgaaaaaaatatttaccagcttgaagaactgtcaaaactcccttactgagtttaagggt
aaaagcttggctcatttggatggaattgatatagtggcactgaatgaaaaactaaaggaa
aaaattcacaaggattttgacgcatgtttggaaccaatggagatgagtttaggtacagca
ttgagaaaatacgctgaagcagtaaagaatgcaaatgcgagggaacaaaatggggtagag
tctcaatcctaa
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