KEGG   Lodderomyces orthopsilosis: CORT_0E05480
Entry
CORT_0E05480      CDS       T02488                                 
Name
(RefSeq) Tex1 protein
  KO
K12880  THO complex subunit 3
Organism
cot  Lodderomyces orthopsilosis
Pathway
cot03013  Nucleocytoplasmic transport
cot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CORT_0E05480
  09122 Translation
   03013 Nucleocytoplasmic transport
    CORT_0E05480
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cot03019]
    CORT_0E05480
   03041 Spliceosome [BR:cot03041]
    CORT_0E05480
Messenger RNA biogenesis [BR:cot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     CORT_0E05480
Spliceosome [BR:cot03041]
 Complex C
  Other components
   EJC/TREX
    CORT_0E05480
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CORT_0E05480
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_EML_2 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40 WD40_Prp19 WD40_WDHD1_1st EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_EML Beta-prop_pof12 WD40_Gbeta Beta-prop_VPS8 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_Aladin Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_NOL10_N DSE1_N WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Tricorn_2nd ASA1 Beta-prop_IFT122_2nd Beta-prop_Vps41 Beta-prop_RSE1_1st SdiA-regulated
Other DBs
NCBI-GeneID: 14540784
NCBI-ProteinID: XP_003870263
UniProt: H8X834
LinkDB
Position
5:complement(1220434..1221504)
AA seq 356 aa
MSQAETTIKHSRVYFQKLTPQVLRDKPLAGHTSSSSEVISISINNCGTRLVTSRTDKSLR
IWKCLSDRMVDPTIVEDAHSKAVESISWDPNSEYNFATVGRDEYIKIWRGSTGTLENVIK
TPLKSLKLIRYSIDGELMIVVDRESNVLCFAVNQNYKLVNEFKVSDYVYDLQWFNYGHEF
FIIALHDGSLPIYKVIDSVDTAINIKLKATLTGHRSSATSIAISPRGRHFAIGASEGVVS
IWDTKSMVNCRVITNIDEVVSSLDINRDGAYIAVSFDKDSNSIIYDLETGEELFQVPNSA
SGKMTFSSICWFPTKSAFAYSSDFGTTVTWMKKTDRDRSDINERGGGLGLNGPRRK
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgctgcaggctgaaaccaccattaaacacagtcgtgtatacttccaaaaactaacccca
caagtgcttcgcgataaaccactagcgggacacacatcatcatcatcagaagtaatctca
atctcaatcaacaattgcggcacgcgtcttgtcacatcacgaactgataaatcattacgt
atctggaaatgtctatctgatcgaatggtcgacccaacaattgttgaagatgcccattca
aaagccgttgaaagtatatcttgggaccccaatagtgaatataattttgcgacagtgggg
agagatgagtatattaaaatatggcgaggttcaaccggcactttggagaatgtgatcaag
acccccttgaaaagtttaaaattgatacgatattcaattgatggagaattgatgattgtt
gttgatcgagaatcaaatgtcttgtgttttgctgttaatcaaaattataaattggtcaat
gaatttaaagtactggattacgtatatgatttacaatggtttaattatggtcatgaattt
tttattatagcattacacgatggatcgttgccgatctataaagtgattgatagtgtggat
acggcaattaacataaagctaaaagccacattgactggccatcgatcttccgctacatca
atagccatatcaccacgaggccgtcatttcgccattggagccagtgaaggggtagttagt
atatgggacaccaaatcaatggtcaattgtcgagtcatcaccaatatcgacgaagtcgta
tcatcattagatataaatcgtgatggagcttatattgcagtttcatttgataaagattca
aactcaatcatttacgatttagaaactggcgaagaactttttcaagttcccaatagtgca
agtggtaaaatgactttcagttcaatttgttggtttcctactaaatcggcgtttgcctat
agctctgatttcggtaccactgtcacttggatgaagaaaactgatcgtgatagaagtgat
ataaatgaaagaggtggtgggttggggttgaatggacctagaaggaaatag

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