Lodderomyces orthopsilosis: CORT_0E05560
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Entry
CORT_0E05560 CDS
T02488
Name
(RefSeq) Rib2 protein
KO
K14655
tRNA pseudouridine32 synthase / 2,5-diamino-6-(5-phospho-D-ribitylamino)-pyrimidin-4(3H)-one deaminase [EC:
5.4.99.28
]
Organism
cot
Lodderomyces orthopsilosis
Pathway
cot00740
Riboflavin metabolism
cot01100
Metabolic pathways
cot01240
Biosynthesis of cofactors
Module
cot_M00911
Riboflavin biosynthesis, fungi, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00740 Riboflavin metabolism
CORT_0E05560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cot03016
]
CORT_0E05560
Enzymes [BR:
cot01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.28 tRNA pseudouridine32 synthase
CORT_0E05560
Transfer RNA biogenesis [BR:
cot03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CORT_0E05560
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Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_2
dCMP_cyt_deam_1
MafB19-deam
Bd3614-deam
GREB1_C
Motif
Other DBs
NCBI-GeneID:
14540792
NCBI-ProteinID:
XP_003870271
UniProt:
H8X842
LinkDB
All DBs
Position
5:complement(1234767..1236524)
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AA seq
585 aa
AA seq
DB search
MSLNGASSGIKRSGSPSQGSNLQQRASKVRDAQGFRLRQQERDKSEKTAFDQMGGANNTD
NTLVEGKTIAEEEAEGAKYVIDGKLRRVTPYYFTYLTYCKLRWRDRTLLDIFTDEFRDRT
PEAYKKAIEGGMVSINSKTANLETVVRNGDLISHRGFRREPPVNAAPVKIVYENDELLVI
DKPSGIPVHPTGRFRYNTITKILQHDMGKTVHPCNRLDRLTSGLMFLGKTAQGSNDFMKQ
IRDRNVSKEYIARVKGEFSTHNLTIDKPLYTLSPKHTLNVVDEEKGKEAVTEFKRVSYDP
TTDTSVVKCHPLTGRTHQIRVHLQYIGHPIANDPIYSNTYVWGDELGKDGKANYDEVISR
LDTIGKTRAASSWIHPEEDGEILSNEICPHTGLPLYTDPGFNDLELWLHAYSYKADDGSW
AYKTEYPEWALENSRKFMVQALKEANKCGETQTQFNVGCVIVHNGEVISTGHSRELEGNT
HAEQCALEKYFEKTGKRKVPQGTELFTTMEPCSFRLSGNLPCVQRILQTPGIKTCFVGVV
EPDIFVKNNTSYKILADSGIAYVHIPGYEDECLKIAKKGHDKIDT
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaaatggtgcctcctctggcatcaaaagaagcggttcaccttcacaaggttct
aatttacagcaacgagcttccaaagtccgcgacgcccaaggattcagattacgtcaacag
gaaagagataaatccgagaaaactgcatttgaccaaatgggaggagccaacaatactgac
aacactttagtagaaggcaagacgattgccgaagaagaagcagaaggagcaaaatatgtc
atagatgggaagttgaggagagtcacgccttattatttcacatatttaacctattgcaag
cttcgttggagagatcgaacgttgttggatatattcaccgatgagtttagggatagaaca
ccagaggcatacaaaaaggcaattgaaggtggtatggttagtataaattcgaaaactgcc
aacttggagactgttgttcgaaatggtgatcttattagtcatagaggtttcagacgcgaa
cctccagttaacgcagcgcctgtgaaaatagtttatgagaatgatgaattgcttgttata
gataaaccttccggtatcccagttcatcccactggccgattccggtacaacaccataacg
aaaattctacaacatgatatgggcaagacagtgcatccttgtaacaggttggatagattg
acatctgggttgatgtttttggggaaaactgcccaaggatcaaatgactttatgaagcag
attagggatagaaacgtgtcgaaggagtatattgctagggtaaagggagagttttccacc
cataaccttactatagacaagccattgtataccttgagtcctaaacacacgttgaacgtg
gttgacgaggaaaaagggaaagaagctgtaacagagttcaaacgtgtatcttacgatcca
accactgacaccagtgtggtaaagtgccatcctttgactggaagaacgcaccagattagg
gtccatttacaatatataggtcacccaatagccaatgacccaatatactccaacacttac
gtttggggagatgagctcggaaaagacggaaaggcaaattatgatgaagtgatttctaga
ttggatactattgggaaaactagggcagcgtcaagttggatacatcctgaggaagatggt
gaaattctttccaatgaaatatgtccacacactggcttgccattatacacggatcccggt
ttcaatgatcttgagctatggttacatgcgtattcgtataaagccgacgacggatcatgg
gcttataaaacggaatacccagaatgggctcttgaaaacagcagaaagttcatggttcaa
gcattgaaagaagctaataagtgtggggaaacgcaaacacaatttaatgttggatgtgtc
attgtccataatggagaggttatatcaactggtcattctagagagcttgagggtaatacc
catgctgaacaatgtgcattggaaaagtatttcgaaaagactggaaagagaaaggtgcca
cagggaacagaactatttacaactatggagccttgctcatttcgtttgagcggtaacctt
ccatgtgtacagcgaatcttgcagacgcccggaatcaaaacctgctttgttggagtagtt
gagcctgacatttttgtaaagaacaatacatcatacaagatactcgctgactctggtata
gcgtacgtgcacattccaggttacgaagacgaatgtttgaaaattgcaaaaaaagggcat
gacaaaattgatacatag
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