KEGG   Candida orthopsilosis: CORT_0F00690
Entry
CORT_0F00690      CDS       T02488                                 
Name
(RefSeq) hypothetical protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
cot  Candida orthopsilosis
Pathway
cot03018  RNA degradation
cot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CORT_0F00690
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CORT_0F00690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cot03019]
    CORT_0F00690
   03041 Spliceosome [BR:cot03041]
    CORT_0F00690
Messenger RNA biogenesis [BR:cot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CORT_0F00690
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CORT_0F00690
Spliceosome [BR:cot03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CORT_0F00690
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C Gemin6 DUF5796 LSM14 pre-PUA_NIP7
Other DBs
NCBI-GeneID: 14541379
NCBI-ProteinID: XP_003870428
UniProt: H8X900
LinkDB
Position
6:join(99532..99559,99620..99897)
AA seq 101 aa
MSELAPFVGKKVHVITTDARFFEGVLEGFDKNTNIILSNSIERIIYSTQEIDETNEEIPS
GVNIMRGNEIVCIGEIDDNLYAKVNWLEMRGSPLKTTKNPL
NT seq 306 nt   +upstreamnt  +downstreamnt
atgtccgaacttgcaccattcgtgggaaagaaagttcatgttataacaaccgacgctcga
ttctttgaaggggtactagaaggattcgataaaaacaccaatataatacttagcaatagc
atcgaacgaataatatactcgacacaagagattgatgaaactaatgaagaaataccgagt
ggtgttaatattatgaggggtaatgaaattgtttgtattggagagattgatgataatttg
tatgccaaagtcaattggttagaaatgaggggatcaccactcaagactacaaagaatcca
ctctaa

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