Candida orthopsilosis: CORT_0F01210
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Entry
CORT_0F01210 CDS
T02488
Name
(RefSeq) Ssd1 protein
KO
K18748
protein SSD1
Organism
cot
Candida orthopsilosis
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0F01210
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
CORT_0F01210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
Rrp44_CSD1
Rrp44_S1
Motif
Other DBs
NCBI-GeneID:
14541560
NCBI-ProteinID:
XP_003870478
UniProt:
H8X950
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All DBs
Position
6:216632..220432
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AA seq
1266 aa
AA seq
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MNSSQNNSGDLPTRVSSRKGKNLHVAHRRSPSELTTLMVEQYNLQRQLDQVQAQQRQILE
QQQQQQQQQYLQPQFEYPPSSSSSHSDFSHSSQQSNHNNNRGSHSRSSSITNNNYNNTHR
RTGSASGTAHGHTRRHSLALNEAIAAADQQRTSRLSSSPSHGEAADDQKIGSFKFPPENN
DPSSPSNAIHDRSRSSAYGQQSFKFPATPSQEVTSGNNSLLPPTPNFSITQSPERGGGSH
NRKPSHYRTASRNSEGINQNWRHQNIHLTPQSGSHHRQSSGLEPPPGFVPGHRPRQSSYG
GGNSVSSISQFLPNNGAGGQGGQGGQNTSNGRKSLFAPYLPQSSLPELINEGRLVTGTLR
VNKKNRSDAYVSTDGLLDADIFICGSKDRNRALEGDLVAVELLVVDEVWESKKEKEEKKR
RKDHNTRPLNDDIHNDATSAPTTAAAAGSSTEGKEEKGEENSLGRRGSLKQRPTMKKNDD
VEVEGQSLLLVEEEEINDEVKPLYAGHVVAVVDRIPGQLFAGTLGLLRPAQAAQAARDKK
SGNEPSVQTPKAPKIVWFKPTDKKVPLIAIPTEQAPSDFVSNHEKYADQLFVASIKRWPI
TSLHPFGTLVSRLGKIDSPEIEVDSILRDNNFLCDEYPNDTLDDEELLNTFDLPSVEPEL
ENPNRTEYLNDYIIAFSPNGEFVDHALHVKRLSNTKIELGFHVSDVSYFVKPGSTLDRKS
KKRSSSVFLPQKVVDLYPQQVNKLISFKENVKNLALSVVFEIDTTNFEVEDLFIHESVIV
PKQIVNYDFFDKILENKPVDTISSATSDYIRTFSLIAKEFRRHRLANRSLGITPNLTLLD
QLDDEKIALSLNIFDDSLARDVVSEIALKVNSAIAAKVQVGLGNKAFLRRQSLPTLQKIE
TFVRKATNLGFKIDTTDAATLQNSLLKIEDPVKRQCVEILLYKCMAPGKNYVAGKQDPDS
YGHYYYNLPLYTHFTAPLRRYADLVVHRQLKAVLRKEDEEKDVDSLKALADYCNFKKDCA
ANAQEQAIHLLLSQTINELSESAGQLLCMGTVVQVYESSFDVFIPEFGIEKRVHGDQLPL
AKAEFDKTNRILELFWENGVDSATYIPPDETTSLSYRNSIKNKYRASSTQAAKIQNKAIL
EKKESNEDSIVEKLRKMNLEPPKLTLPPLKKTKEVVDEDVTRSMPSSPTQSHIPQNVRTN
SSSLIEESEGSSAAGLAPYLQNLETRIEGDSHIQVVRELTEVPVLLRAEIGMTLPCLTVR
VLNPFT
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgaattcatcacaaaacaattcaggggatctccccactagagtatccagcaggaaagga
aaaaacttgcatgtggcacatagacgctctccttccgaattaaccactttgatggttgag
caatataacttacaacgtcaattggatcaggttcaagcacagcaaagacaaattttggaa
caacaacagcaacaacaacaacaacaatacttgcaaccacaatttgagtatccaccactg
tcatcctcctctcattccgatttcctgcattcttcacaacaatccaaccacaacaataat
cgtggttcacattccagatcgtcctcaatcaccaacaacaactacaacaacactcataga
aggacaggctctgcaagtggcactgcccatgggcatacgagaagacactccttggcgctt
aatgaagccattgctgctgctgatcaacagaggaccagtagacttagctcgagcccactg
catggcgaggcagctgatgaccaaaaaattggatcatttaaatttccaccagagaataac
gatccgtcgagtccaagtaatgcaattcatgaccgttcaagatcactggcatatggtcag
cagtcattcaaatttcctgcgactccatctcaagaagtaacaagtggtaataacagcttg
ttacccccaactccaaatttcagcattactcaatctccagaacgtggtggaggcagccac
aatagaaaaccctcacactacagaaccgcatcacgtaactccgagggtataaatcaaaac
tggaggcaccaaaacattcatttgacaccgcaatctggctcgcatcacagacaatcatcg
ggattggaaccaccaccaggatttgttcccggtcacaggccccgtcaaagctcctatggc
ggaggaaattcggtatcatctatttcacagtttttgccgaataatggtgctggaggccag
ggaggacaaggaggacaaaatacaagcaacggtcgtaaatcacttttcgctccttacttg
ccacaatcatctcttcctgaattgatcaacgagggccgcttggtaactgggactttaaga
gttaacaagaaaaataggtcagatgcatatgtctccactgatggattgttagatgccgac
atttttatttgtgggtctaaggatcgtaatcgtgcattggaaggggatttagttgctgtc
gagttattggttgttgatgaagtttgggagtcaaagaaggagaaggaggaaaagaagaga
aggaaagaccacaatactagaccattgaatgatgatatccataatgacgccacatcagca
cctacaaccgcagcagcagcaggttctagtacagagggtaaagaagaaaagggcgaggaa
aactctttgggaagaagaggctcacttaaacaaagaccaacaatgaaaaagaatgatgat
gtcgaggtggagggacagtcgttgcttttagtcgaagaggaggaaataaatgacgaggtt
aagcctttatacgcaggacatgttgtggctgttgttgacagaattcctggccaattattt
gcaggtacattgggcttgttgagaccagcacaagccgcacaagctgccagagacaagaag
tctgggaatgaaccatcggttcaaacacccaaggcaccaaagattgtatggtttaagcct
accgataagaaagttccattgattgctattcctaccgaacaagctccatctgattttgta
agcaaccatgaaaagtatgccgatcaattgtttgttgcttcaataaagagatggcccatt
acatcgttgcatccttttggaactttagtatccagattgggaaagattgacagtcctgag
attgaagtggattctattttgagagacaacaatttcctttgtgacgaataccctaatgac
actcttgacgatgaggaactactcaataccttcgatttgccatcagttgaaccggaattg
gaaaatccaaacagaactgagtatttgaatgattatattattgcattttcacctaatggt
gagtttgttgatcatgcgttgcatgtgaagagattatccaatacaaagattgagttggga
ttccatgtatcagatgtgtcatactttgttaaaccagggtcgacattggaccgtaagtcg
aaaaagagatcatcatcggttttccttcctcagaaagtcgtcgatttataccctcaacaa
gtcaacaaactaatctcgttcaaagaaaatgtgaagaacttggcattgtctgttgttttt
gaaatcgacaccaccaactttgaggttgaagatttattcattcacgagtcagtgattgtc
cccaaacaaattgtcaattacgactttttcgataaaattttggaaaacaaaccggtggac
acaatttcatccgcaacttccgactacatcagaacttttagtttaattgcgaaggagttc
cgtcgccatcgtttggcaaataggagcttgggtattactccaaacttgactttgcttgac
cagttggatgacgaaaagattgcattgagtttgaatatttttgatgatagtttggctcgt
gatgttgtttcagaaattgcattgaaagtgaactctgcaattgctgccaaagtccaagtc
ggattaggtaacaaggcatttttgcgtcgtcaaagcttgcccacattacagaaaatagag
acgtttgtacgtaaggcaactaatttgggattcaaaattgatactacagatgcagctact
ttgcagaattcattgttgaagattgaagatcctgtcaagagacaatgtgttgagatttta
ttgtacaagtgtatggctcccgggaaaaattatgttgctggtaagcaagatcccgatagt
tatggtcattactactacaacttacccttgtatacgcactttaccgctcccttgagacgt
tatgccgatttggttgttcacaggcaattgaaagcagtattgcgcaaagaagacgaagag
aaggacgtggactcattaaaggctttagctgattattgcaattttaaaaaggattgtgct
gctaatgctcaagagcaagcaattcatctcttattatcgcaaaccatcaatgaattgagt
gagagcgccgggcaattattgtgcatgggaactgttgtacaagtttacgagtcttcattt
gacgtatttatccccgaatttggtatcgaaaagagagttcacggagatcagttgcccctt
gccaaggcagaatttgacaagactaatagaattttggaacttttttgggaaaatggtgtt
gattcagcaacttacattcctcctgatgaaacaacttcattgtcttatagaaactcaatc
aagaacaagtacagagcttcgtcaacacaagcggccaaaattcaaaacaaggctattttg
gagaaaaaggagtctaatgaagactcaattgtggagaaattgcgcaagatgaacttggag
cctccaaagttgacgttgcctccattgaaaaagactaaagaggtggtggatgaggacgtt
accagatcaatgccaagctcgccaacacaatctcacatccctcaaaatgtgagaaccaac
tcttcttccctcattgaggagtctgaagggtcaagtgctgccggtttggcgccatatttg
caaaaccttgaaaccagaattgaaggtgattcccatattcaagttgttagagaattgaca
gaagttccagtgttgttgagagcagaaattggtatgacattgccatgcttgactgttcgt
gttttgaatccatttacgtag
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