Candida orthopsilosis: CORT_0F03090
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Entry
CORT_0F03090 CDS
T02488
Name
(RefSeq) transcription factor
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cot
Candida orthopsilosis
Pathway
cot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CORT_0F03090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cot03021
]
CORT_0F03090
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0F03090
Transcription machinery [BR:
cot03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CORT_0F03090
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CORT_0F03090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
Pfc11_Clp1_ID
CID
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
14541649
NCBI-ProteinID:
XP_003870662
UniProt:
H8X8Q8
LinkDB
All DBs
Position
6:complement(645716..647254)
Genome browser
AA seq
512 aa
AA seq
DB search
MADVIAEFEQKLSELTINNGLIISQLTQLAKQHPEVADRIIDLITARIYRVIPEQKLYTL
YALDDICKVVGNPYNILVGDDIYDIFTHVFQLNNDFIRGKLVKMYDLWKTVPLKSTGEPV
YPEEQLTKIGQFLKKAGYPKEESVKQVNLPPKPTVSLQQSLINDIDKLIPIFENQLRTNS
MDQKVADRFKALNSLRGMLTRQEMKPAELEAIKSHIVNIQSQATPVTPAITPRATTPRAT
TPFTPVNPAFQIFNDLILSGLVKKDQEPIPGSKPVYTLVFPETKYSLDQERTEASLEDLL
LQSSSIPRSEYDKQKFVELMSISKKTSDGDLQHFINNNKLSANTLNLLYEAKPSKCSICG
KRFTTDPEGANNKRLHLDWHFRMNKKLTVKGGNIQSRNWFVDDYEWVKLVENRVGEQDST
VTDQSVDIPVATEVQYAIVPENDTNMNNRCLICREQVKAKYNDEIGEWVWYDCLKPPGEK
NSRRIVHVACFNDKKRSAESDINPNVKREKIY
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgtcattgcagagtttgagcaaaagctatcagagctaacaataaacaatgga
ttgattataagtcagttgactcaattagccaaacaacatcccgaagtggcggaccgaatt
atcgatttaatcacagctaggatttacagagtcatacctgaacaaaaattgtatacgtta
tacgccttggatgacatatgtaaagtagttggcaatccttataacattctcgtcggtgat
gatatttacgacattttcacacacgtctttcaactaaataatgattttatacgaggaaaa
ttagtcaagatgtatgatctttggaagacggtgccacttaagagtacgggtgagccagta
tatccagaagaacagttgactaaaattggccagtttttgaaaaaagctggttatcctaaa
gaagagtcagttaaacaggtgaacttaccaccaaaacccacagtctctttacaacaatct
ttaataaacgatattgacaaactaatacctatttttgagaaccaattacgaacaaatagt
atggatcaaaaggtagcagatagattcaaggcgttgaatagtttaagaggcatgttgact
agacaagaaatgaagccagccgagttagaggcaattaaatcgcatatagtcaatattcaa
tcacaagcgactccggttacaccagctattaccccacgagcaacaacgccacgagcaaca
acgccattcacacctgtgaatccagcttttcaaatattcaatgatttgatattatcggga
ttggtcaagaaggaccaagaaccaatcccagggtcaaaacccgtctatacattagtattt
cccgaaacaaaatactctttagatcaggaacgtacagaagcaagcttggaagatttgcta
ttgcaaagtagttcaattccaagatcagaatatgacaaacaaaaatttgttgagttgatg
agtatttctaaaaagacgtctgatggagacttacaacactttatcaataataataagttg
agtgcaaacacgttaaacttgttgtatgaagccaaaccttcaaagtgttccatttgtggg
aaaaggttcaccacagaccctgagggtgcaaacaacaaacgcctacacttggactggcat
ttcagaatgaacaagaagttgactgtcaaaggtggtaatatacaatcaagaaattggttt
gttgatgattacgagtgggtcaaattagtcgagaatagagttggtgaacaggattctaca
gtcactgatcagagtgtagatattcccgtagctactgaagttcaatacgccattgttcct
gaaaacgatacaaatatgaacaatcgatgcttaatctgtcgtgaacaagtcaaagctaaa
tataatgatgagatcggcgaatgggtttggtatgattgtttgaaaccaccgggcgagaaa
aactcaagaagaattgtacatgtagcatgctttaatgacaaaaagaggtcggcagaatca
gacataaacccaaacgttaaaagggagaaaatatattga
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