Candida orthopsilosis: CORT_0G03860
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Entry
CORT_0G03860 CDS
T02488
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cot
Candida orthopsilosis
Pathway
cot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CORT_0G03860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0G03860
03041 Spliceosome [BR:
cot03041
]
CORT_0G03860
03009 Ribosome biogenesis [BR:
cot03009
]
CORT_0G03860
03016 Transfer RNA biogenesis [BR:
cot03016
]
CORT_0G03860
Enzymes [BR:
cot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CORT_0G03860
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CORT_0G03860
Spliceosome [BR:
cot03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CORT_0G03860
Complex C
U4/U6.U5 tri-SnRNP related factors
CORT_0G03860
Ribosome biogenesis [BR:
cot03009
]
Eukaryotic type
Pre-60S particles
Helicases
CORT_0G03860
Transfer RNA biogenesis [BR:
cot03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CORT_0G03860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Angiomotin_C
PPP1R21_helical
Motif
Other DBs
NCBI-GeneID:
14542248
NCBI-ProteinID:
XP_003871188
UniProt:
H8XA86
LinkDB
All DBs
Position
7:796042..799200
Genome browser
AA seq
1052 aa
AA seq
DB search
MDDLFDVFDEAPGAVPPKIEEIEESENINEANGNDKKRSHKEEEDTKKSTPTKKAKQQQE
VKPVVFDSVEIEASREVDASGGLQQTIEDPNSKLKLRHQVRHQVAVPPSYPYVPISEHKR
EKEARTYPFTLDPFQDTAISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTS
PIKALSNQKYRELQAEFQDVGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMREVAWV
IFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPCHVVYT
DFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMTTIGDNTGDDPASAEKGKGRKG
QSFKGGNKDSKTDIYKIVKMIYMKKYNPVIVFSFSKRDCEKLALQMSKLDFNTDEERTAL
TEIYNNAIGLLPESDKELPQIKNILPLLKRGIGIHHSGLLPILKEIIEILFQEGFLKVLF
ATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID
EKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLESSFYQFQNAASVPA
LEQKMQSLQKEIEGVHIDDEATVKEYYDLSQQLNKYTADVRKVVTHPGHILPFLQDGRVI
KIKVGDYDYGWGMVTSFVKRKTSRYQAQEFTAHESYIVNVFVYTMFVDSPINLIKPFNPL
LPEGIRPARPGEKSRAEYIPITLDSIEKISSVRLRVPDDYKSAQAKRTLVKTMKELPKRF
KDGIPKMDPVESMKIDDDDFRTLLRKIDVIESKLYSNPLHDTARLQDLYAKYSHKADIEK
KIKELKEKILEAEAVIQLDDLRHRKRVLRRLGFITQNDIIELKGRVACEISSGDELLLTE
LIFNGNFNDLSSEQSAALLSCFVFQERAKEVPRLKPELAEPLKLMQEMAAKVAKVSKECK
IDITEQDYVESFRPELMEVVFAWCKGASFTQICKMTDVYEGSLIRMFRRLEELIRQLVVA
AKAIGNVELQEKMEKSLELVHRDIVSAGSLYL
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttgtttgatgtatttgatgaggccccaggagctgtacctccaaagatagag
gagattgaagaatctgaaaatatcaacgaggcaaatggaaacgacaagaaaagatcgcac
aaggaagaggaggacacgaaaaagtcaacaccaacaaagaaggccaaacagcagcaagaa
gtcaagccggtagtatttgactctgtggaaatagaagcatcgagagaagttgatgctagt
ggcggattacaacaaaccatcgaagaccctaattccaagttaaaattgagacatcaagtc
aggcaccaagtagcagttccgccatcatatccgtatgtacctataagtgagcacaagcgt
gaaaaggaagctagaacatatccattcacattagatccgtttcaagataccgcaatttcg
tgcattgaccgtaacgaaagtgttttggtgtctgctcatacatctgcaggtaaaactgtt
gttgccgagtatgctattgcccagtcgttaagagataagcaaagagtcatttacacatct
ccaattaaagcattgtcaaatcaaaagtatcgtgaattgcaagccgagtttcaagacgtg
ggattaatgactggtgatgttacgataaaccctgacgctggttgtttggtcatgacgact
gaaattttacgaagcatgctttatagaggttcagaagtgatgagagaagttgcttgggtt
atttttgatgaggtgcactatatgagagacaaatcaagaggtgtcgtttgggaagaaaca
atcattttgctacctgacaaggtccactatgtgtttttgtcagcaaccattcctaacgca
atggagtttgctgaatggattgtcaagattcacaaccagccatgccacgttgtgtatact
gatttcagacctactccattgcaacattatttattccctgccggaggagatggtattcac
ttggttgttgatgaaaagggaacatttagagaagaaaatttccaaaaagcaatgaccaca
attggtgacaacaccggtgatgatcctgcctctgctgaaaagggaaaaggacgaaaagga
cagagtttcaaaggtggaaataaggatagcaagacagatatctacaagatcgtcaagatg
atttacatgaaaaaatacaacccagtgattgtcttttccttctccaaaagagattgtgag
aaattggcattgcaaatgtcaaaattggatttcaacactgatgaagagagaacagcattg
acggaaatctacaacaatgctattggtcttttgcccgaaagtgataaggagcttccacaa
atcaaaaacatattacctttattgaaacgaggaataggtattcaccattctggtctttta
ccaatattaaaggagatcattgaaatcttattccaggaagggtttttgaaagtgcttttt
gctactgagaccttctctattggtctcaatatgcctgcgaaaacagttgtttttacatct
gtccgtaaatgggatggtgtaggtttcagatgggtttcaggaggtgaatatattcaaatg
tctggacgtgccggtagaagaggattggatgataggggtatagtcatcatgatgattgat
gaaaaaatggaaccacaagttgcaaaagggatggtcaagggtcaagctgataggctagat
tcagcattccacttgggatataatatgattttgaacttgatgagagtcgagggaatatct
ccagagttcatgttggagagttcgttttaccaatttcaaaatgctgctagcgtaccggct
ttggagcagaagatgcaatctctacaaaaagaaattgaaggtgtacatattgacgacgaa
gcaactgtgaaagagtactatgatttgctgcaacaactcaataagtacacagcagatgta
agaaaagttgtcacacacccgggtcatatattgccgttcctacaggatggaagagtgatt
aagatcaaagtgggggattatgactacggttgggggatggttacatcgtttgtgaagaga
aaaacaagccgttatcaggcacaagaattcactgctcatgaatcttacatcgtgaacgtg
tttgtgtatacaatgtttgttgattcaccaatcaacttgatcaaaccattcaatccattg
ttgccagaaggtatcaggccagcaagacctggagaaaaatcgagagcagaatacatacca
attactttagattcgattgagaagattagcagtgttaggttgcgggtgccagatgactac
aagagtgcacaagcgaagaggacattggtaaagactatgaaggaattaccaaaaagattc
aaggatggaattccgaagatggaccctgttgagagtatgaagattgatgacgatgacttc
cgtaccttgttgcgcaaaattgatgttatcgagtccaagttgtatagcaatccgttacat
gacacagccagattgcaagatttgtatgccaaatactcgcacaaggctgatattgaaaag
aagatcaaagaattgaaggaaaagatcttggaagcggaagcagtcatacaattagacgat
ttgagacatagaaagagggttttacgtcgacttggatttatcacccagaatgacataatc
gaacttaagggaagagttgcttgtgaaatcagttcgggtgatgaattattattaacagaa
ttaatcttcaatggtaattttaatgatttgtccagtgaacagtcagctgcattgttgtcg
tgtttcgtattccaagagcgtgctaaagaagtaccccgtttgaaaccggagttggccgaa
cctttgaaattgatgcaagaaatggctgctaaagttgccaaggtatcaaaagagtgcaaa
attgacataacagaacaggactatgtcgaatcttttagaccagagttgatggaggttgtc
tttgcttggtgcaagggagcttcattcactcaaatttgtaaaatgactgatgtttacgaa
ggttcattgattagaatgtttagaagactagaggagttaataaggcagttggtggttgct
gcaaaagctataggaaatgttgaactacaggaaaagatggagaaatcattggagttggtt
cacagggatatagtttcagcaggatctttatatttgtag
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integrated database retrieval system
