Corynebacterium pseudotuberculosis Cp162: CP162_04940
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Entry
CP162_04940 CDS
T02154
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cou
Corynebacterium pseudotuberculosis Cp162
Brite
KEGG Orthology (KO) [BR:
cou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cou03019
]
CP162_04940 (hrpA)
Enzymes [BR:
cou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CP162_04940 (hrpA)
Messenger RNA biogenesis [BR:
cou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CP162_04940 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
AAA_30
ResIII
AAA_11
NACHT
HA2_N
PhoH
TsaE
SLFN-g3_helicase
AAA_16
ABC_tran
AAA_23
Tc-38
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AFM07566
LinkDB
All DBs
Position
complement(1052127..1056125)
Genome browser
AA seq
1332 aa
AA seq
DB search
MSTAKHQPHNKRDVESKAIPTTPEEQRSLANFSRTDTELRSTKESLRAQLSQVSIAEERV
FLRRIHKASSKSAITAISADIQQAQIALSQKAALIPSITFPENLPVSSQRDAIAQAITNN
QVVIIAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRLAARTVAERIAEELDQKIGTS
VGYAIRFDDRVSASTSIKLMTDGILLAEMQRDRFLNAYDTIIIDEAHERSLNIDFILGYL
KQLLPRRPDLKVIITSATIDPERFAQHFANADGEPAPIIEVSGRTYPVEILYRPLEIPDG
EKLIDVDPIDGLIQAIQELMGYGPGDILCFFAGEADIREAMDAIEAKRWKNVKVTPLFGR
LSNQEQHRVFSPHSGRRIVLATNIAETSLTVPGIHFVVDTGTARISRYSTRTKVQRLPIE
PISQASANQRSGRCGRVTDGIAIRLYSQQDFESRPEFTDPEILRTNLASVILRMASLKLG
DIENFPFIQAPDTRAIRDGFLLLRELGALADSAKTNSPLLTTVGRTLAKIPLDPRLARML
IAAEEFGCLREAYIVVAALSIQDVRERPLEKQSQADQLHARFKDTSSDFLSYLKLWEYIS
EKRTELSGNAFRRTMQSEFLHYMRIREWSDLIRQLRSIGEQIGWTNPDDIAGHLIPDNLH
KALLAGLLSHIGLRDGDSKEFIGSRNSRFLVFPGSSLAKRPPQFLMAAELVETSRLWARN
VAEIDPAWVEHIGKNLLKHNYSEPYWSTKRVAAMVHQRSTLYGVPIIADRPVGYASIDPR
AARDMFIREALVNGNWTTHHKFYRRNAEKLLSAAQIEEKIRRRDVVIDEDALYNFYDSRL
PDHITTGRSFDRWWKTAVHKTPHLLDFDLEKLRRGESANVNEEDFPDIWRRGSLEFGLTY
HFDPSAEDDGVTVLVPVPLLGGLDADGFEWLVPGLLEDLVTELIRSLPKHLRKTVVPAPD
FAHKITTMLDYRDGFLYQRIAECLSELGRPGISADDFNPNALPKHLKITFAAVDKRGRII
DRDKSLDSLKSRRSEQIRASVSRVSHAVEQSSAKEWTPQSLGTISQEVTTKVDGQLVTTY
PALVVTPEGISVKAMPTKREADISMFTATLTLLIKATPVNTQKMLNGLPLQQRVAIENYP
HGGATGFVNDAQVAVVRDLIIANGGAVRSPEEFSKLQTIIKPLVPSKVRAIVVELAPGIN
SYLRVKSEINNWTGPAIDDINNQLNFLLPPRAISQHGAHRLKHLPRYVQAITLRLEDMER
MPDRDTDRQSLVNRLERGLAQKIQKSGQGKSAHQVRDIQWLIQELRVSLFAQRLGTTQSV
SERKIAKAIEQL
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgcgaaacatcagccccataataagagggacgttgagtcaaaggcgatccca
actactcctgaggagcaacggagcttggcaaacttctcccgaacagataccgagctacgc
tcaacaaaagaatctcttcgcgcacaacttagccaggtcagtatcgctgaggaacgagtc
ttccttcgtcgtattcacaaagcctcttctaaaagcgcaatcacagctatctccgcagat
atccaacaggctcagatagcgttatcgcagaaagcagcgctcattccctctattactttt
cctgagaatctcccggtctccagccaacgcgacgctattgcacaagccattaccaacaat
caggttgtgattattgctggagaaacaggatcaggaaaaaccacccagatacccaaaatc
tgtctagagctaggtcgcggggtacgtggattaatcggacatacgcaaccgcgtcgactc
gcggcacgcactgttgccgagcgtatagccgaagaacttgaccaaaaaatcggtacttca
gtgggatatgccatccgctttgatgaccgtgtttctgcttctacatccatcaagctgatg
actgacggcatcctgctcgcagaaatgcagcgggatcgattcctcaacgcttatgacacg
ataattatcgacgaagcccacgagcgcagcctcaacatcgattttattcttgggtacctc
aaacagcttcttccgcgccgtcccgatcttaaagtcatcattacttctgccacgattgac
ccagagcggtttgcgcagcactttgccaacgcagacggtgaacctgcgcccattattgag
gtctccggacgtacgtaccctgttgaaatcctttatcgtccgcttgaaatccccgatggg
gaaaagcttatagacgtagatcccatcgatgggctcatccaagccatccaagagcttatg
ggatatggccccggcgatattctttgtttctttgctggcgaagcagatatccgcgaagcg
atggatgctatcgaagccaaacggtggaaaaacgtaaaggtcacacccctctttgggcgt
ctctccaaccaagaacagcatcgagtcttttccccacattccgggcgccgaattgttttg
gctactaacatcgcggaaacctcgctgactgttcccggtattcattttgtcgtggacacc
ggaacagcccgtatttcaagatattccacccggaccaaagtccagcgtcttcctatcgag
cctatctctcaagcaagcgctaaccagagatcaggacgctgtggtcgtgttacagacggc
atagcaattaggttgtactcccagcaagactttgaatctcggccagaatttactgatcca
gagattttacgaacaaacttggccagcgtcattctccggatggcttccctcaaattggga
gacattgaaaattttccttttatacaagcacccgataccagagctatccgtgacggattt
ttactgctcagggagctaggagcccttgcagattcagccaaaacaaactccccactcctc
actacagtcggccgtactctggccaagatacctttggaccctcgtttagctcgcatgctg
atcgcggcagaagaatttggttgtttaagagaagcctacatagtggtagctgcgctgagc
attcaggatgttcgcgagcgtccgctagaaaaacaaagtcaagctgatcagctccacgca
cgttttaaagacacaagcagtgattttcttagctaccttaaactttgggaatacatatca
gaaaaacgcaccgaactttctggtaatgcttttcgacgtaccatgcagtccgaattctta
cactacatgcgcattagggaatggtcagatcttattcgtcagttacgtagcatcggcgaa
caaattggatggaccaacccagatgacattgcaggtcatctcatcccagataacctgcac
aaagctctcctagccggactactgtctcacatcggtttaagagatggcgattctaaggaa
tttataggaagcagaaactccaggtttttggtgtttcctggttcctcattggccaagcgt
cccccgcaattccttatggcggcagagcttgtggaaacttcacggttatgggcgcgtaat
gtagcggagatcgatccagcgtgggtcgaacatataggtaaaaatctgctcaagcacaat
tattctgagccgtattggtctacaaagcgcgtagcagccatggtgcaccaaagatctacg
ttatacggtgttccgattattgctgatagaccagtcggatacgcttccatcgatcctcgt
gctgcccgcgatatgtttattagagaagccctagtcaatggtaattggactactcaccat
aagttttatcgtcgcaacgcagaaaaactactctcagctgcgcaaattgaagaaaaaatc
cgacgtcgcgatgttgtaatcgatgaagatgctctctataacttctatgattccaggctc
ccagatcacatcactacaggacgttcctttgaccgctggtggaaaacagccgtccataaa
acgcctcatcttctagactttgatctggaaaaattgcgccgaggtgagtcagcaaacgtc
aatgaagaagacttccccgatatttggcgccgaggttctttagaattcggcttaacctac
cactttgatcccagcgccgaagatgacggtgtcactgttcttgtgccggtacccttactg
ggaggactcgatgcagacgggttcgaatggctagttcctggtttgttagaagatctggtt
actgagctgatccgttctttaccaaaacacctgcgtaaaaccgttgttcctgcaccagat
tttgcccataaaatcaccaccatgctggattatcgcgatggtttcctctatcaacgcatc
gccgaatgcctatctgaattagggcgtcctggaatatctgcggatgattttaacccgaac
gcactccctaaacacctcaaaataacattcgctgctgtagataaacgcggacgtatcatt
gatcgggacaaatcgctcgattccctcaaatcccgacgttctgaacaaatccgagcttca
gtttcacgagtgtcccatgctgtcgagcaatcctctgctaaagaatggacgcctcagtct
ctaggcactatctcacaggaagtgactacaaaggtcgatgggcagctggttaccacgtat
ccagccctcgttgttaccccagagggtatttcggtcaaagccatgcccactaagcgtgag
gccgatatctctatgtttacggcgacactaacgttgctgattaaagcaacgcctgtaaat
actcagaagatgctcaatggcctcccacttcagcaacgagttgctatagaaaactatcct
cacggtggggccacaggctttgtcaacgatgctcaagttgcagttgtaagagacttgatc
attgctaacggtggcgcggtgagatcaccagaagagttttctaagttacaaacgattatt
aaaccattagttccgagtaaggtacgtgcaatagttgtcgagctagccccaggcattaac
tcttatctccgcgttaaatccgagataaacaactggaccggcccagccatcgacgacatt
aataatcagctcaatttcctccttccaccgcgggcgatatcccaacatggggcacaccgc
ctcaagcatctcccaaggtacgtgcaagcaatcacgcttcggctcgaagatatggagcgc
atgccagaccgggatacagacaggcagtcactagttaatcgactagagcgaggcttagca
caaaaaatccaaaaatctggacaaggaaaatctgctcaccaagtacgcgatattcagtgg
ttgattcaggaattacgtgtcagcctttttgcccaacggctagggactacgcaatcagtt
tctgagagaaaaatcgcaaaagcaatcgaacagctctaa
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