Corynebacterium pseudotuberculosis Cp162: CP162_06905
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Entry
CP162_06905 CDS
T02154
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cou
Corynebacterium pseudotuberculosis Cp162
Pathway
cou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP162_06905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cou03021
]
CP162_06905
03019 Messenger RNA biogenesis [BR:
cou03019
]
CP162_06905
Transcription machinery [BR:
cou03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CP162_06905
Messenger RNA biogenesis [BR:
cou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CP162_06905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFM07191
LinkDB
All DBs
Position
complement(1496812..1498998)
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AA seq
728 aa
AA seq
DB search
MTSFTSGKGDERTSVTTTDNGAQRNLAALRLPELRKIAAEMGLKGTSALRKGDLIAAISG
AQGGKAAQSGHSAAPAAKRNARAQAAPKAEKDSAPVENSVPEVSKEQQEKADQVPAKESK
SRRRRVLKTTGTMDSTHETASSEPISQESSPAEEEKPRRRRVTRRVEVSSEKRDPAENSP
QDKTDMPSESNDGVARVSENGDAEDENRYESRSAARRARRNRARREHREDRQTSQREDNH
AEGDRSSNDEEQRKEASVDNVKATGRREAPEQQAADRPQTRETREGSENEHPRQRNGRHH
ERGERGDRNRRNRRNRRGRDRDDHRDNSNIEPREDEVLQNIAGILDIVDSNVAFVRTSGY
HAGSADVYVNNQMIRRLGLRAGDAITGQVRMNGDNNHGGHHGHNRGRNRQKYNPLVRVES
VNGMSVEEAKARPDFSKLTPLYPNQRLRLETEPKILTTRVIDLIMPIGKGQRALIVSPPK
AGKTTILQNIANAIATNNPECYLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSEHTA
VAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSNALYPPKRFL
GAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKGTGNAELKLDRKISERRVFPAVDVN
PSGTRKDELLLVPEEARIMHKLRRILAALDNQQAIDLLIKQLKKTKSNGEFLMQIASSAP
MAADAEEE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtgacatcttttacctctggtaaaggcgatgaaaggacatctgtgacaacaacagataac
ggcgcacagcgtaatcttgctgcattgcgtctgcccgagctgcgtaagatcgccgctgaa
atgggtctaaaaggcacctctgcattacgcaaaggtgatcttatcgccgcgattagcggc
gcgcaggggggaaaagctgcacagagcgggcatagtgccgcgcctgcagcaaagcgtaat
gctcgagcacaggctgcccccaaagcagagaaagactctgcacctgtagaaaactcggtt
ccagaagtatctaaggaacaacaagaaaaagctgaccaggttccagctaaggagtccaag
tcgcgtcgccgtcgcgttctgaagaccacaggaaccatggattcaactcatgaaacagct
tccagtgagcctatttcacaggaatcctcgccagcagaggaagaaaagccacggcgacgc
cgtgtgactcgtcgcgtagaagtttcttcggagaagcgcgaccctgcagagaattctccg
caggataaaacggatatgcccagcgaatcgaatgatggtgtagcacgagtttccgagaat
ggcgatgcagaggatgaaaatcgctatgagtcgcgttcggctgctcgacgtgctcggcgt
aatcgtgctcgtcgggaacaccgtgaagaccgtcagacgtctcagcgcgaggacaatcac
gctgagggcgatcgatcttctaacgatgaggaacagcgcaaagaagcatccgttgataac
gtgaaggcaacggggcgtcgagaggcccctgagcagcaggctgcagatcggccgcaaact
cgggaaactcgtgagggctctgaaaatgagcatcctcgtcagcgcaatggccgtcaccat
gagcgtggcgagcgtggggatcgtaaccgtcgtaaccgccgcaatcgtcggggtcgtgac
cgcgacgatcatcgggataactccaacattgagccccgtgaagacgaggttttgcagaac
atcgccggcatccttgacattgtggatagcaacgtcgctttcgtgcggacctcgggctat
catgcagggtctgcagatgtctacgttaacaaccagatgattcgtcgtttgggtttacgt
gctggcgatgccatcaccggacaggttcggatgaacggcgacaacaaccatggtggacat
catgggcataatcgtggacgcaaccgccaaaagtacaatccgttggttcgcgttgaatct
gtcaacggcatgtccgtagaagaagctaaggctcgtccggacttttctaagctcactccg
ctgtacccgaaccagcgactgcgtttggaaacagagccgaagattcttaccactcgtgtg
atcgacttgatcatgcctatcggcaaaggccagcgtgcgcttatcgtgtctccgccgaaa
gctggtaagactacgattttgcaaaacatcgctaatgccatcgccacgaataatcccgag
tgctatttgatggtggtgcttgtcgacgagcgccctgaagaagtcaccgacatgcagcgc
tccgtcaagggtgaggttattgcctctaccttcgaccgtccgccaagcgagcacactgct
gtagccgagttggcaatcgagcgtgctaaacgactcgtagaacaaggacaagacgttgtg
gtgcttctagattccatcactcgccttggtcgcgcttataacaactcttcgcctgcttca
ggtcgtatcctgtccggtggcgtggattcgaacgctctctatcctccaaagcgcttcctg
ggtgcggctcgtaacatcgaaaatggtggttcgctgaccatcattgctactgcaatggta
gaaactggttctgcaggcgacaccgtgatctttgaggagtttaagggcaccggcaacgca
gagctcaaactggatcgtaagatctccgagcgtcgagtattccccgcagtagacgttaac
ccgtcaggaactcgtaaggacgagctgcttttggttcctgaagaagctcgcatcatgcat
aagttgcgcaggattctcgcagccttggacaaccaacaggccatcgacttacttattaag
cagcttaagaagaccaaatctaatggtgagttcttgatgcagatcgcttcaagtgcaccg
atggctgcagacgccgaggaggagtaa
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