Corynebacterium pseudotuberculosis Cp162: CP162_08095
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Entry
CP162_08095 CDS
T02154
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cou
Corynebacterium pseudotuberculosis Cp162
Pathway
cou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP162_08095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cou03019
]
CP162_08095
03009 Ribosome biogenesis [BR:
cou03009
]
CP162_08095
Enzymes [BR:
cou01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CP162_08095
Messenger RNA biogenesis [BR:
cou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CP162_08095
Ribosome biogenesis [BR:
cou03009
]
Prokaryotic type
rRNA processing factors
CP162_08095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ASA48308
LinkDB
All DBs
Position
complement(1756175..1759456)
Genome browser
AA seq
1093 aa
AA seq
DB search
MAEETTKKVPARRATRKTATRKTAEDTATQDTVVPVDRDAIGDRIRVHALAKLASVSSRE
LIATLATLGLTKVAQSTLTREEALKLLDAHHIDSYSAEEKLRHRVEKNVENEIHQIEEKV
ERELQDREAVREEDHQDSSENAVAEDTIVVITEDEVAELLSDIEPEITPAPGLSAPAFPT
PLFIAPTPAEELESNVDDSVEDDEESAQSRRRRRGRRGTGRGKRTDSEDSFSEDLEESPD
NEEPGEEKTEELITEPVGIKGSTRLEAQRRRRAEMREESRNKRHIVSEAEFLARRESVKR
TMIVRERERSDHPGVVTQVGVLEDDLLVEHFVTSDTQSSMIGNIYLGRVQNVLPSMEAAF
IDIGKGRNGVLYAGEVDWRAAGLGGRGRRIEQALKSGDQVLVQVSKDPAGHKGARLTTQI
SFAGRYLVYVPNGRTAGISRKLPAPERKRLKNILKEVVPKDGGAIIRTAAENVSAEAIAA
DVNRLHKLWNQIQELTEKEKNSKGAKPVTMYEEPNMLVKVVRDLFNEDFSELIVDGDRAW
NTVHAYIQSVAPELQDRLIKFDREAHEDRDAFEVHRVDEQLHKALSRKVWLPSGGTLVID
RTEAMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLS
ENQDLVLRRLTEALGRDRTRHQISEVTSLGLVQMTRKRLGTGLLETFATECEHCEGRGVI
IHDDPVEQSVSDAAIEKSSRARSGKAKAARKHGVAHQDPAQHPAAIAMQHHEEAGSAAGS
NTSDASTADISPAADTRTSIDDLAAAVVIDDVELEKVVDSVASDVAEPGLLEPSKEKKGR
RRRRGLRNSKRKDRGAADDVMDIVDAALDRAFTEDPDEPSGADHLPLSGNKLSRSTTSVT
YEEALAAFENSPRRKRAVRGNSVSDHAPKPEDFKRIDVTEGAEEDTFASEASEETYSGSR
RSRRVARKQGETRKAVENPTQSEVADDTESTGNVKIDSLRGRRRRAVRRRFQETNLVPSV
VEAVEEESTTKGRRRRRAVRKTVVKAPRKAVIGEESSGVYVKDETVPETREASSAGRGRR
RVARRVRTATKRN
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaagagaccacaaaaaaggtgcctgcgcgtcgggcgacacgaaagaccgcgacg
cgaaagaccgctgaggatactgctacgcaggatacggtggtacctgttgatcgtgatgcg
atcggggaccggattagggtgcatgcgctggctaaattagcgtcggtaagttcacgtgaa
ctcatcgctactcttgccacactagggcttactaaggttgcgcagtcgacgctgacccgc
gaagaagccctgaagctactcgacgcccaccacatcgacagctactcagccgaagaaaag
ctgcgccaccgggtggaaaagaatgtggaaaatgagatccaccagatcgaagaaaaagta
gagcgtgaactgcaagaccgagaggcagtgcgcgaggaagaccaccaggattcttctgaa
aacgcagtagcggaagatacgatcgtagtgatcaccgaggacgaggtagcggagcttctt
tcagatatcgagccagagatcacgcccgctccaggattgtctgccccggctttccccacg
ccactgttcattgcgccgacgccagcggaagaactggaaagcaacgtcgatgactctgtt
gaagatgatgaggagtcggcgcagtctcgtcgtcgccgccgcggtcgccgaggcacgggg
agaggaaagcgaactgattctgaggattccttctctgaggatctcgaggaatccccggac
aatgaagaacctggtgaggaaaagaccgaggaactgatcaccgaaccggtcgggatcaaa
gggtctacgcgcctggaagcgcagcgtcgtcgtcgtgcggagatgcgagaagaatcgcgg
aataaacggcatatcgtttcagaagcagaattcttggcgcgccgggaatctgtaaagcgc
accatgattgtgcgggaacgcgagcggagtgatcatcctggagtagtgacccaggtgggc
gttttagaagacgatctactagttgagcactttgttaccagcgatacgcagtcctcaatg
atcggaaacatatatttgggacgcgtccaaaatgtgctgcccagcatggaggccgcattt
atcgatattggaaaaggccgcaatggcgttctctatgcgggcgaagtggactggcgtgcc
gcaggcttaggaggccgggggcggcgtattgagcaggccctcaagtctggcgatcaggtg
cttgttcaggtatccaaagatcccgcaggccacaagggtgcgcggttgaccacccagatt
tctttcgcagggcgttacctggtgtacgtgcctaacgggcgcaccgcgggtatttctcgc
aagcttcctgctccagagcggaagcgcttgaagaatatcctcaaagaggttgtgcctaaa
gacggcggagctatcatccgtaccgctgcggaaaatgtctctgcggaggctatcgctgcg
gacgtgaatcggttgcacaagctgtggaatcagattcaagagctcacggagaaggagaaa
aactccaagggcgctaagcctgtcaccatgtatgaagagcccaacatgttggtgaaggtg
gtgcgtgatcttttcaacgaggacttctcggagctgattgtcgacggcgaccgtgcttgg
aataccgttcacgcctatatccagtcagtcgctcctgagctacaggatcgtctgattaag
tttgatcgggaagcgcacgaggatcgcgatgcgtttgaagtgcaccgcgtagatgaacag
ctgcacaaggccttgtcgcggaaagtgtggcttccctctggcggaaccttagtgatcgac
cgtacagaagctatgacagtcattgacgtgaacaccgggaagttcacgggttctggcggc
aatcttgaagaaacggtaactcgtaataaccttgaggctgcagaagaaatcgttagacag
atgcggttgcgcgatcttggcggcatgatcgttgtggacttcattgacatggtcctttca
gaaaaccaggatctagtgttgcgtcgactcaccgaggcactaggccgtgaccggacgcgt
caccagatttctgaggtgacgtcgttaggcctagtgcaaatgactcgaaagcgtcttggc
acgggcttgctagagacttttgccaccgaatgcgagcattgcgagggccgtggagtcatc
attcacgatgaccccgtggaacaaagcgtttcggatgctgctattgagaagtcctcgcgc
gcacgttccggaaaggctaaggcagctcgaaaacatggggttgctcatcaagatccggcg
cagcatcctgctgctatagcaatgcagcatcatgaggaggctggctctgccgctggttcc
aatacctctgacgccagcactgctgacatcagccctgctgctgatactcgaaccagcatt
gatgatcttgccgccgctgtggtgatcgatgacgtagagcttgagaaggtcgtggactcc
gtggcgagtgacgttgcggaacctggtttgctggagccatccaaagagaagaaggggcgc
agaaggcgtcgcggcttgcgcaattccaagcgaaaggacaggggagcagcggacgatgtt
atggacatcgtcgacgcggctttggaccgagcttttacagaagatccagacgagccctca
ggtgccgatcatctgccgctatcgggtaataagctcagccgcagcactacttctgtgacc
tacgaggaagcgctggcagcgtttgagaattcgccgcgtagaaaacgtgcggtgcgtgga
aactccgtatcggatcatgcgccaaaaccggaggattttaagcgtatcgacgtcaccgag
ggagccgaagaagacacgtttgcaagcgaagcttctgaggagacctattcaggtagccgc
cgctcacgccgcgtggccaggaaacagggagaaacgcggaaggccgtggagaacccaacg
caatcagaggttgcggacgataccgagtcgacgggtaacgtgaagatagattctctacgc
gggaggcgccggcgtgccgtgcgcaggaggttccaagaaacaaatcttgttccatcagtc
gttgaggctgtggaagaagaatcgacgacgaagggtcgacgccgtcggcgtgccgtgcgt
aaaaccgtggtgaaagcgccccgtaaggctgttatcggtgaggaatcttccggtgtgtac
gtgaaagatgagacggtgccagaaacgcgcgaggcatcatctgcgggccgagggcggcga
cgcgtggcgcgtcgggtgcgcacggcgacaaagagaaactaa
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