Colwellia sp. Arc7-635: EKO29_00195
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Entry
EKO29_00195 CDS
T06022
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cov
Colwellia sp. Arc7-635
Pathway
cov03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cov00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKO29_00195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cov03019
]
EKO29_00195
Enzymes [BR:
cov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EKO29_00195
Messenger RNA biogenesis [BR:
cov03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EKO29_00195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
P-loop_SecA
HI1480
CMS1
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AZQ82624
LinkDB
All DBs
Position
43152..44516
Genome browser
AA seq
454 aa
AA seq
DB search
MSFTDLGLSAPIQKAIAEKGYDTPSPIQAQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL
ELLSKGDKVRPNQARTLIITPTRELAAQIAENVEMYGKHLPLKSTVVFGGVKINPQMQRL
REGVDILVATPGRLLDLYNQKAVRFNQLEILVLDEADRMLDMGFLRDIKKILSLLPKNRQ
TLLFSATFSPDIRELAKGLVNDPVEISISPKNTTAETVEQLIYSVDKNRKSALLTHLIIE
NDWQQVIVFMKTKHGANKLTKQLDAAGIQAAAIHGNKSQGARTKALAQFKEGKISVLVAT
DIAARGIDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGHAVSLVCADEIDLLNDVEH
VIQAHLPREIVAGFEPVHALPESRNLRALKPKKPRKFKSEGSEHKDGQRSGDNARGNKPT
GKNRRHIGNNSSPSNPYGNSDGNGGGRRRANPSK
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaccgatttaggtttatctgccccgattcaaaaagcgattgcggaaaaaggt
tacgatacgccatcacctattcaagctcaggctattcctgctgtacttgctggtaaagac
gtcatggctgctgcgcaaacgggcacaggtaaaacggctggctttaccttacctattctt
gaactcttatcaaagggcgacaaagtacgtccaaaccaagctcgaacgcttattattacc
ccaacgcgtgagctagcggcacaaatagcagaaaatgttgaaatgtatggtaagcactta
cctttgaagtcaacggtagtatttggtggtgttaaaattaacccgcaaatgcaacgcttg
cgtgaaggggtagatattcttgttgcaacaccgggtcgtttattagatttatataatcag
aaagcggttcgctttaaccaactagaaattttagtactcgatgaagccgacagaatgttg
gacatgggctttcttcgcgatatcaaaaagattttgtcgctgttaccaaaaaatcgtcaa
acattacttttctcggctaccttttctccagacatacgtgaacttgctaaaggccttgtt
aacgatcccgttgagatttcgattagcccgaaaaatacgacagctgaaactgttgagcag
ttaatttactcagtcgataaaaatagaaaatcggcattgctaacacatttaattatcgaa
aatgattggcaacaagttatcgtgtttatgaaaactaaacacggggcaaataaattaact
aaacagctagatgctgctggtattcaagctgctgctattcatggcaacaaaagccaaggt
gcaagaacgaaagcattagcgcaatttaaagaaggcaagattagcgtattagttgctact
gatattgctgcccgtggtatcgatattgaccagttaccgcaagtggttaactttgaatta
cctaatgttcctgaagattacgttcaccgtattggtcgtactggccgtgcaggttctagt
ggtcatgcagtatctttagtttgtgctgatgaaattgatttacttaatgatgttgagcac
gtgatacaagctcatttaccaagagaaattgttgctggttttgaacctgtgcatgcttta
cctgaatcacgtaatttacgcgcattgaaacctaaaaagccacgtaaattcaagtcagaa
ggttctgagcataaagatggtcaacgttcaggcgataatgctcgtggtaataagccgaca
ggtaaaaatagacgtcatattggtaataacagttcaccaagcaatccttatggaaatagt
gatggtaatggtggcggacgtcgccgtgccaatcctagcaagtaa
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