Colwellia sp. Arc7-635: EKO29_07290
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Entry
EKO29_07290 CDS
T06022
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cov
Colwellia sp. Arc7-635
Pathway
cov03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EKO29_07290 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cov03400
]
EKO29_07290 (recD)
Enzymes [BR:
cov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EKO29_07290 (recD)
DNA repair and recombination proteins [BR:
cov03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EKO29_07290 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
RecD_N
UvrD-helicase
SH3_13
UvrD_C
NAT10_TcmA_helicase
AAA_22
SLFN-g3_helicase
CbiA
ResIII
AAA_16
nSTAND3
DEAD
DUF87
FtsK_SpoIIIE
AAA_24
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
AZQ83848
LinkDB
All DBs
Position
1672290..1674506
Genome browser
AA seq
738 aa
AA seq
DB search
MPELILNSESTTNAQTANIYASFAHAARQLEGLVAVDYFFAKEISHCLGFSAFGTVTENL
AASSFASTNLGQGHDQGHEQLHEQHRQQQQWFHLLIALSASLRDGHSCLPLAQVAGKRLF
ADAMNQSGTSTNINNKGFLFSDLTTLNALMAKLPLAPLNENERAQTAQPLNLAEPIVLSH
ERLYLRRYFQFEQELKQVVYERRNISEQQTSLSADGSAALANVSEIKSIIETLFPESVQQ
DASKANDIDWQAVAVANAINKDFAIIAGGPGTGKTYTVTKLLAALIMLANANSKSNNSEA
DKDNKDNDFIAPRISLVAPTGKAAQRLSESISSAVKGFRGKIDDAVLDLIPEQAQTIHRL
LGVIPEQVNFRHHQDNQLAIDILLIDEVSMVDLPMMTRIFRALPAHTKVILLGDADQLPS
VAVGSVLADFAPRPHVGYSALNHQYLAQVTGYQSLEKDVTVLAKNKQYSAADCVAFLMKS
RRFDGEGGIGRIANDVIKGNYQESWQLLQASAALDNSAQTELFNDEKELTLLSGSIDTWL
TPLVEQYYLGISQCSKVEDAFVLLAKFRILSSTRKGPQGVENLNALVIDILRDKGVIPFN
RFESNTTLYSGQPIMISENDYRLGVYNGDIGLLWRNSHGHLMAVFENAQGGYDWILPSRL
PKFETVYAMTIHKTQGSEFAHVAMVLPEQKDNRLLSRELLYTGITRAKQRLSIASSQSVW
QSGVSQQVKRHSGLAIEQ
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcttattctaaacagtgaaagcaccactaatgcgcaaacagcaaacatttac
gcttcttttgctcatgccgctcgtcaattggaaggtttagtcgcggtcgattacttcttc
gctaaggaaataagccactgcttaggcttttcagcttttggtacagtgacagaaaatctt
gcagcgtcgagctttgctagcacgaatcttgggcaaggacatgatcaggggcatgaacaa
ctacatgagcagcaccgtcagcaacaacaatggtttcatttactgatagccttaagtgca
agtttgcgagacggtcatagttgtttaccattggcgcaagttgcgggtaaacgcttgttt
gctgatgcgatgaatcaaagtggcactagcaccaacattaacaataaaggctttttattt
agcgatttaactaccctcaacgcgctaatggcaaaactgcctttagcaccgttaaacgaa
aatgagcgggcacaaacagcgcagccacttaatctagctgagcctatcgtactaagtcat
gagcgtttatatctgcgccgctactttcaattcgagcaagagttaaaacaagtagtgtat
gagcgccgtaatattagcgagcaacaaacgagtttgtcagcggatggcagcgcagcactg
gctaatgttagcgagataaaaagcattatcgaaactttatttcctgaatcagtacaacaa
gatgcaagtaaagctaatgatattgattggcaagcagttgccgtggccaatgcgattaat
aaagactttgctatcattgctggcggcccaggtacgggtaaaacttataccgtaacgaaa
ttactcgcagcgttgataatgcttgcgaacgccaatagtaaaagcaacaattcagaagct
gataaagacaataaagacaatgactttatcgcaccgcgtatttctttagtcgcgccaacc
ggtaaagccgcacagcgattatcagaatctatttccagtgccgttaaaggctttcgcggt
aaaatcgatgatgccgtattagatctcattcctgagcaagcacaaactatccatagattg
ttgggcgttattcctgaacaagtaaactttcgtcatcatcaagacaaccaactcgccatt
gacattttactgattgatgaagtttctatggttgacttacctatgatgacgcgtattttt
cgcgctttacctgctcacaccaaagttattttattgggtgatgcggatcaattaccgtca
gtggctgtaggcagtgttttagctgattttgcccccaggccacatgtgggttatagcgct
ttaaatcatcaatatttagcacaggttaccggttatcaatcgctcgaaaaagatgtcacg
gtactagcaaaaaataagcaatatagtgcagctgactgtgtcgcttttttaatgaaaagc
cgtcgcttcgatggtgagggtggtattggtcgtatcgctaatgatgttatcaagggtaac
tatcaagaaagttggcaactgttacaagcaagtgcagcacttgataattcggcgcaaact
gagctttttaatgacgaaaaagaactgacattactttctggcagtatcgacacatggtta
acgccgctcgttgagcaatattatttaggcataagtcagtgcagtaaagttgaagacgct
tttgttttactggcaaagtttagaattttatcgtctacgcgcaaaggcccacaaggggtt
gaaaacctgaacgcactggtaattgatattttacgcgataaaggtgttattccttttaat
cgttttgagtcaaacactacattgtattcgggtcagccgataatgatcagtgaaaatgat
tatcgcttgggcgtatacaacggtgatattggtttattatggcgtaatagtcatgggcat
ttaatggcagtatttgagaacgcgcagggcggttatgactggatattgccatcgcgttta
cctaaatttgaaaccgtttatgccatgaccattcataaaacccaaggtagtgagtttgca
cacgttgctatggtgctgcctgagcaaaaagacaatagattattgtcacgtgaattatta
tatactggcattactcgagcgaagcaacgcttgagcatcgcgagcagtcaaagcgtatgg
caaagtggcgttagtcagcaagttaaacgtcattctgggctcgcaatagaacaataa
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