Colwellia sp. Arc7-635: EKO29_07640
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Entry
EKO29_07640 CDS
T06022
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
cov
Colwellia sp. Arc7-635
Brite
KEGG Orthology (KO) [BR:
cov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cov03016
]
EKO29_07640 (rnd)
Enzymes [BR:
cov01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
EKO29_07640 (rnd)
Transfer RNA biogenesis [BR:
cov03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EKO29_07640 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
LOH1CR12
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
AZQ86262
UniProt:
A0A3Q9G9A9
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All DBs
Position
1738847..1739977
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AA seq
376 aa
AA seq
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MYVENSQQLNLVCQRYSQASMLAIDTEFVRTRTLYPKLGLIQINDGNTLALIDPVALPDL
SPFWQLLENPSIQKVLHACSEDLEVFLTAGNCRPVNLIDSQIIMAFLGHGLSLGYAAMIA
HYTDIELDKSESRTDWMKRPLTEKQLNYAEADVEHLFNILPVLMADIEKTGWLAAAQEES
DLMVERKFSPIDENLLYRNVKMAWRLNPVQLYRLQQLTIWRYKQAQQKDRPIGFIAKDHT
LLALAQINPSNVRDMANIEGVESLDVRHKGNAMLAVLKRTEEESPAELPAQILRLDEYPG
YKQNFKKVKSFINEISEKESLITENLASKKQINQFLSWHFKLNGAEHNLHLVDIMRGWRK
PLLGDKLLAFVENDFK
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atttatgtcgaaaactctcagcaattaaaccttgtttgtcagcgctatagccaagcgagc
atgctcgcgattgatactgaatttgttcgcacgcgaacgctttatccaaaacttgggcta
attcagataaatgacggaaacacactggcacttattgacccagttgctctgcctgactta
tcgcctttttggcaattactggaaaatccaagcattcaaaaagtgctacatgcttgttct
gaagatcttgaagtttttctcaccgccggtaactgtcgaccggttaacttaatcgacagt
caaattattatggcatttttaggtcatggcctatcgttaggttatgccgctatgattgcc
cattatactgacattgagcttgataaatcggagtctagaaccgattggatgaaaagaccc
ttaaccgaaaaacaacttaactacgctgaggctgatgttgagcacttgtttaatattttg
ccagttttaatggctgatattgaaaaaacgggttggttagccgcagcgcaagaagaaagc
gacttaatggttgaacgtaaatttagcccaattgatgaaaacctactgtatcgcaatgtt
aaaatggcttggcgtttaaatccggtacagctttatcgcctgcaacagctaacaatatgg
cgttataagcaagctcagcagaaagatcgcccgattggctttattgctaaagatcatacg
ctactagccttagcgcaaattaacccaagtaatgttcgcgatatggcgaatattgaaggt
gttgagtcacttgatgtacgtcacaaaggtaacgcgatgctagcggtactcaaacggact
gaagaagaaagtccggctgaattacccgctcaaatacttcgtttggacgagtatccagga
tataagcaaaactttaaaaaagttaaaagctttattaatgaaattagtgaaaaagagagc
ctgatcactgaaaacttagcgtctaaaaagcaaataaatcaattcttatcttggcacttt
aaactcaatggagcagagcataacttgcacttagttgatattatgcgtggctggcgcaag
ccgctattaggtgacaagttactggcctttgttgaaaacgattttaagtaa
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