Colwellia sp. Arc7-635: EKO29_15170
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Entry
EKO29_15170 CDS
T06022
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
cov
Colwellia sp. Arc7-635
Brite
KEGG Orthology (KO) [BR:
cov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cov03009
]
EKO29_15170 (srmB)
Enzymes [BR:
cov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EKO29_15170 (srmB)
Ribosome biogenesis [BR:
cov03009
]
Prokaryotic type
rRNA helicases
EKO29_15170 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Phage_integrase
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AZQ85199
UniProt:
A0A3S9Q8I7
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All DBs
Position
3516895..3518130
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AA seq
411 aa
AA seq
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MFEQFDLDSALLGGVENAGFKKPTSIQELVLPVAMTGKDVLASAPTGTGKTAAFILPAAQ
HLLDYPRPQQGFPRVLILSPTRELAIQTHEQCEKLTALTNIKSAVITGGVNYGSHKEVLT
GNTDILVATPGRLMEYIESEQFDSREIEILILDEADRMLTMGFAETINRIVAEARWRKQT
MLFSATLEGSAVVRFSRELLNEPVFLEANPSRKEKAKIHQWMHLADDKDHKYALLLNLLQ
QEDVERALVFANKRETVQYLSGKLYADNMPCVWLEGKMQQDKRNTSVERLRNGTVRVLVA
TDIAERGLDIDDITHVINFDMPRTADIYLHRIGRTGRAGNKGTAISLVEAHDMTVIGKIE
RYIKERLPRRVIEVLRPKNKEARVALKKAKVKRTVAQKKAKAKKQAKRNKS
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaacagtttgacctagattccgcgttattaggcggcgttgaaaatgccggcttt
aaaaagccaacgtctatccaagaattagtacttcctgtggctatgacaggcaaagacgta
ttagcttcagcccctacaggaacgggaaaaacagcagcgtttattttaccagctgcccaa
cacttacttgattaccctcgcccccagcaaggctttccccgtgtgttaattttgtcgcca
acacgcgaacttgccatacaaactcatgaacaatgtgagaagttaactgcgctgactaat
attaaatcagcggttattactggtggtgtcaattacggtagccataaagaagtgcttaca
ggtaacaccgatattttggttgcaactcctggtaggttaatggagtacattgaaagtgaa
caatttgatagtcgcgaaattgaaatcctgattttagatgaagctgatcgcatgcttact
atgggttttgcagaaacgattaatcgcattgttgctgaagcacgctggcgtaaacaaacc
atgctgttttccgcaacattggaaggttcagccgtagtacgtttctcacgtgaacttttg
aacgagccggtattcttagaagctaatccgtctcgaaaagaaaaagcaaaaattcatcaa
tggatgcacctggcagacgacaaagatcataaatacgctttattgctaaatttattacaa
caagaagacgtagaacgtgcgctggtttttgccaataaacgtgaaacagtgcaataccta
tcaggtaagctttatgcggacaatatgccctgtgtctggcttgaaggtaaaatgcaacaa
gacaaacgcaacacgtctgtcgaacgtttacgtaatggcacggttcgtgttttagtcgcg
acagatatcgctgaacgtggtttggatattgacgatataacgcatgttattaactttgat
atgccgcgcacggccgatatttatttacatcgtattggccgtactggccgagcgggtaat
aaaggcaccgccatctcattagttgaagcgcatgacatgacggttataggtaaaatcgaa
cgctacattaaagagcgtttacctcgtcgagttattgaagtactaagaccgaaaaacaaa
gaagctcgtgttgctctgaaaaaagctaaagtaaaaagaacggtggctcaaaagaaagca
aaagcgaaaaaacaagcgaaacgcaacaaaagctaa
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