Colwellia sp. Arc7-635: EKO29_18880
Help
Entry
EKO29_18880 CDS
T06022
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
cov
Colwellia sp. Arc7-635
Pathway
cov03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EKO29_18880 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cov03400
]
EKO29_18880 (uvrA)
DNA repair and recombination proteins [BR:
cov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EKO29_18880 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EKO29_18880 (uvrA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
RsgA_GTPase
AAA_21
nSTAND1
AAA_22
AAA_25
DnaJ_CXXCXGXG
nSTAND3
AAA_23
NTPase_1
Viral_helicase1
cobW
MMR_HSR1
Glu_synthase
T2SSE
ExoX-like_C
Motif
Other DBs
NCBI-ProteinID:
AZQ85878
LinkDB
All DBs
Position
4403342..4406200
Genome browser
AA seq
952 aa
AA seq
DB search
MKKIEVRGARTHNLKNINVDIPRDKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGEPRC
PDHHLPLTAQTISQMVDRVLELEEGTKVMVLAPVLQERKGEHTKLLDNLASQGYIRARID
GEVCDLSDPPTLELHKKHTIEVVVDRLKVREDIQLRLSESFETALSLTSGTVKVAFMDEP
KKEELIFSANFACPQCGYSMQELEPRLFSFNNPAGACQTCDGLGNQQYFDESRIIADPKL
SLAGGAIRGWDQRNFYYFQMLQALAEHYQFDLDLPFNKLKEKTQQLILKGSGKQEIEFKY
MNDRGDIVIRKHPFEGILNNMDRRYRETESNAVREELAKYLNSQHCPDCNGSRLRLEARN
VFVGDTPLPEVAEYAIADALAFFQGLKLTGQKGQIAEKILKEVCDRLGFLVNVGLNYLNL
SRAAGTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRDLGNT
VIVVEHDEDAIRAADYVIDIGPGAGVHGGHIIAEGNVDDILACEDSLTGKYLSGRERIEI
PDVRVPFDKKNVVKLKGATGNNLKNVDLIIPNGLMTCVTGVSGSGKSTLINDTLYKLAHI
ELNGATTQEPAPHKEIVGLDLLDKVIDIDQSPIGRTPRSNPATYTGIFTAIRDIFAATQE
SRSRGYKPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDVCKSKRYNRETLEVKY
KGKSIHEVLDMTIEDAVDFFSPIPAIKRKLQTLMDVGLSYIKLGQSATTLSGGEAQRIKL
SKELSKRDTGKTLYILDEPTTGLHFHDIKQLLQVIHRLRDHGNTVVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVTGTPEQVAKHKDSHTARFLKPLLAKEKLAKAKRAK
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaattgaagtcaggggtgcccgcactcataacttaaaaaatattaacgtcgat
atccctcgtgacaagttagttgttatcacagggctttccggttcaggcaagtcttcatta
gcctttgatactttatatgccgaagggcaaagacgctacgtagaatcactttctgcttat
gcacgccagtttttatctttgatggaaaaacccgacgtcgaccacattgagggcttatct
ccagctatttccatcgagcaaaaatcaacatcgcataatccccgctctaccgttggtact
atcaccgaaatatacgattacctacgtctgctttatgcccgtgttggtgagccgcgttgc
ccagatcatcaccttcctttaaccgcacaaacgatttctcaaatggttgaccgcgtttta
gagctagaagaaggcactaaagtgatggtattagcaccggtattgcaagagcgcaaaggt
gaacatactaaattattagataacctcgcctctcaaggctatattcgtgctcgtattgat
ggcgaagtatgtgacttatctgatccaccgactttagaattacataaaaaacataccatt
gaagtggttgttgatcgtctaaaagtacgcgaagacattcaactacgtctttctgagtct
tttgaaaccgcactttcactgacatcaggtaccgtgaaagtagcgttcatggacgagcct
aagaaagaagagttaattttctcggctaattttgcctgtccacaatgtggctatagcatg
caagaattagagccacgtttattctcattcaacaatcctgctggcgcatgtcaaacgtgt
gatggcttaggcaatcaacagtattttgatgaaagtcgcattattgctgaccctaaatta
agtttagctggcggcgctattcgaggttgggatcagcgtaatttttactactttcaaatg
ctacaagcattagctgaacattatcaattcgatttagatttaccctttaataaactgaaa
gaaaaaacgcagcagctgatattaaaaggcagtggcaaacaggaaatcgaatttaaatac
atgaatgatcgtggcgatattgttattcgcaagcacccattcgaaggtattttaaataac
atggaccgtcgttaccgcgaaacggaatcgaatgccgttcgtgaagagctagcaaaatac
ttgaatagccaacattgtccagactgtaacggcagtcgacttcgcctagaagcgcgtaat
gtttttgttggtgatacgcccttacccgaagtagcagaatatgccattgctgatgcctta
gcttttttccaaggtttaaagttaaccggtcaaaaaggccaaattgcagagaaaattctt
aaagaagtctgtgaccgtttaggctttttggttaacgttggcttaaattatctcaatttg
tcacgcgccgcaggcacattgtcaggtggtgaagcgcaacgtattcgcttggcgagccaa
ataggggcaggtttagttggcgtgatgtacgttttagatgagccatcaattggtttacat
caacgtgataatgaacgtttattagaaaccctgatccatttacgcgatttgggcaatacc
gttatcgtggtcgaacatgacgaagacgctattcgtgctgccgattatgttattgatatt
ggtcctggcgcaggcgtgcatggcggtcatatcattgccgaaggtaatgttgatgacatt
ttagcatgtgaagactcacttaccggcaagtacctatcaggtagagagcgcatcgaaata
cctgacgttagagtcccttttgataagaaaaatgtagttaagcttaaaggcgcaacaggc
aataacttaaaaaatgttgatttaatcattccaaatggcttgatgacctgtgttaccggt
gtttccggctcaggtaaatcaaccctgattaacgataccttgtataaacttgctcacata
gaattaaacggggcaaccacgcaagagccggctccacataaagaaattgttggtttagat
ttactcgataaagttatcgatattgaccaaagccccattggtagaacaccacgttctaat
cctgcgacttataccggtatttttaccgctattcgagacatatttgccgcaacgcaagag
tctcgctctcgtggttataaaccgggccgctttagcttcaatgttaaaggtggacgttgt
gaagcgtgtcagggtgatggtctaattaaagtcgaaatgcactttttacctgatgtttac
gtcccttgtgatgtttgtaaaagtaaacgttataaccgtgagactttagaagtaaaatat
aagggtaagagcattcatgaagtgcttgatatgaccatcgaagatgcggttgatttcttc
tcaccaattccagcgattaaacgtaaattgcaaaccttaatggatgttggtttgagttat
attaagcttggacaatcggcaacaacgctgtctggcggtgaagctcaacggatcaagcta
tccaaagagctgtctaagcgcgataccggtaaaacactttatattttagatgagccaacc
acgggtttgcacttccacgatattaaacagctattacaagtgatccatcgcttacgtgat
catggcaataccgtcgtggttattgagcataatttagatgtgatcaagaccgctgattgg
atagtcgatttaggcccagaaggcggctcagggggcggtgaaatactcgtaaccggtaca
ccagagcaagttgcaaagcataaagattcgcataccgcgagattcttaaaacctttgtta
gcaaaagaaaaactggctaaagcaaagcgtgctaaataa
DBGET
integrated database retrieval system
