KEGG   Colwellia sp. Arc7-635: EKO29_19405
Entry
EKO29_19405       CDS       T06022                                 
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
cov  Colwellia sp. Arc7-635
Pathway
cov03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cov00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    EKO29_19405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cov03400]
    EKO29_19405
Enzymes [BR:cov01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     EKO29_19405
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     EKO29_19405
DNA repair and recombination proteins [BR:cov03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     EKO29_19405
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS Zn_Tnp_IS91 Sec8_C Zn_ribbon_8 Zn_ribbon_NOB1
Other DBs
NCBI-ProteinID: AZQ85971
UniProt: A0A3Q9GDS9
LinkDB
Position
complement(4515408..4516316)
AA seq 302 aa
MPELPEVEVCRLGITPHILGQKVNDVVVRNAKLRWPIPDEVHSVVDKTLEKIERRSKYLL
LKFSSGTLLLHLGMSGSVRILEEDTPAAKHDHFEMLFDNGKMLRLNDPRRFGAVLWFPEH
HDQQGLLAKLGPEPLSDDFTYGHLFSKAGNRKVPIKTFLMDNHVVVGVGNIYANEALFIA
SIHPATLVNCISEKKFNELTDIIKTVLAAAIEQGGTTLKDFTQADGKPGYFAQKLFVYGR
KGEKCDGCQTILEEIRQSNRSSIFCPQCQVQQMPKPIAKNTVKKKVKVESKKIVNVGSAK
KK
NT seq 909 nt   +upstreamnt  +downstreamnt
atgccagagttaccagaagttgaggtttgtcgtttaggtattacgcctcatattttaggc
caaaaagttaatgatgtggtggtacgtaacgctaaattacgttggcctattcctgatgaa
gtacatagtgttgttgataaaacattagaaaaaatagagcgccgttctaaatatcttttg
ttaaagttttctagcggcaccttgttgttacatctaggaatgtccggttcggtgcgtatt
cttgaggaagacactccagcagctaagcatgatcactttgaaatgttatttgataacggc
aaaatgctgagattgaatgatccacgccgatttggtgctgtgctgtggtttcctgaacat
catgatcagcagggcttgttagctaagttaggtcctgagccgttaagtgacgactttact
tacggacacttattcagcaaagcgggtaatcgcaaagtgccgattaaaacgttcttgatg
gataatcatgttgtcgtcggtgttggtaatatctatgctaatgaagcgctttttatcgcg
agtattcacccagccactttagtgaactgcattagcgaaaagaagtttaatgagttaact
gatattattaaaacggtgttagcggcagcaattgagcaaggtggcacgacgctaaaagat
tttactcaagctgatggtaagccaggttactttgcccaaaaattatttgtttatgggcgt
aaaggtgaaaaatgcgatggttgccaaaccatattagaagaaattcgccaatcaaatcgt
agctcgatattttgtccgcaatgccaagtgcaacagatgccaaaaccaatagctaaaaat
acggtaaagaaaaaagtaaaagtagagtcgaaaaaaatcgttaacgtgggcagcgctaag
aaaaaataa

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