Caldicellulosiruptor owensensis: Calow_0271
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Entry
Calow_0271 CDS
T01347
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
KO
K03090
RNA polymerase sigma-B factor
Organism
cow
Caldicellulosiruptor owensensis
Brite
KEGG Orthology (KO) [BR:
cow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cow03021
]
Calow_0271
Transcription machinery [BR:
cow03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Calow_0271
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
HTH_3
DUF7645
GerE
HTH_VMAP-M9
KORA
HTH_38
MarR
Trp_repressor
Sigma70_ECF
Nup49_C
NUP120_helical_2
Motif
Other DBs
NCBI-ProteinID:
ADQ03872
UniProt:
E4Q336
LinkDB
All DBs
Position
322120..322890
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AA seq
256 aa
AA seq
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MVDEKKVLAIDDENIDKLFEEYQKTKDVKLRNELVNRHLYIAEIIAKKFVNRGIDYDDLY
QVACVALINAVERFEPNKGYKFTSFATPTIMGEIKRYFRDRASIIRLPRRIYETSAKIKL
ATEVLSTKLKRPPKVEEIAQHLNMSTEEVLEVMEASNSYLPQSLDQTMYEDEEMTLGDVL
GKSDESILQVENVEAVKKAIERLSPFEREFLQKRFFEEKTQKEIAEEMNVSQMYISRLEK
KVLKKLKDFIEEKKEE
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atggttgatgaaaaaaaagtattggcaatagatgatgagaatatagataaacttttcgaa
gagtatcaaaagacaaaagatgttaagctcagaaatgaacttgtgaacaggcacctttat
atagctgagattatagcaaaaaagtttgtcaacagaggaatagactatgatgacctttac
caggttgcatgcgttgcactaataaatgctgtggagaggtttgaacctaacaaaggttat
aaatttacaagttttgcaactccaactataatgggagagataaaaagatatttcagagat
agagcttcaatcatcagacttccaaggagaatctacgaaacctctgccaagataaaactt
gcaacagaggtgctttctacaaaattaaaaagaccgccgaaggtagaagagattgctcag
catcttaacatgagcacagaagaagtcttggaggtaatggaagcatcaaatagttatctt
cctcagtctttggaccagaccatgtatgaggatgaagagatgacgcttggagatgttctt
ggcaagagcgatgagagcatcttacaggtagaaaatgttgaagctgtaaagaaggcaatt
gaaagactttcaccttttgagagagagtttcttcaaaagcggttttttgaagaaaagact
caaaaggaaattgcagaggagatgaacgtttcacagatgtacatttcacggcttgaaaaa
aaggtgttaaagaaattgaaggatttcattgaagagaaaaaagaggaataa
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