Caldicellulosiruptor owensensis: Calow_0503
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Entry
Calow_0503 CDS
T01347
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cow
Caldicellulosiruptor owensensis
Pathway
cow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calow_0503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cow03019
]
Calow_0503
Messenger RNA biogenesis [BR:
cow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Calow_0503
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
pre-PUA_NIP7
Motif
Other DBs
NCBI-ProteinID:
ADQ04086
UniProt:
E4Q4C4
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All DBs
Position
585044..586708
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AA seq
554 aa
AA seq
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MKKKQDKIRIIPLGGLNEIGKNMLVVEVNDEIVVIDCGLAFPEDEMLGIDLVIPDISYLV
KNKERVKALILTHGHEDHIGAIPYVLRDLNVPIYGTKLTLGLVEIKLMEFGIDLNTVKLF
TVKAGDVISFANMRVEFIRTTHSIADSVAVAIHTPLGPIVHTGDFKVDFTPIEGEPIDLI
RFAELGKQGVLALLCDSTNAERPGFTLSERTVGATFDRIFSQAQGRVIVATFSSHIHRVQ
QVINSAEKQGRKICVLGRSMVNVVNKALELGYLKMPDGMLIDVDELDNYPLNRIVLITTG
SQGEPMSALSRMASAEHKKVGIIPGDVVIISAAPIPGNEKFVNRVINDLFRQGAQVIYED
IDDIHVSGHACQEEIKLIHNLTRPKYSIPVHGEFKHLIHHAKLAMELGEKNVFVLENGKV
LEITKDGAKVVGMVQAGNVLVDGLGVGDVGNVVLRDRRHLAQDGLFIVVLTIDSSTRDVL
SGPDIITRGFIYIKESEPLIEEAKRVIKDVLYFCNKNDITEPNAIKVILKDNLRNFLFEK
TRRNPMIIPIITEI
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaagcaagataaaatcaggatcataccacttggtggactcaacgaaattggt
aaaaatatgcttgttgttgaagtaaacgacgaaatagttgttattgattgtgggcttgcg
tttccagaagatgagatgcttggaattgatctggtgatacctgatatatcgtatcttgtc
aaaaacaaagaaagagtaaaagctttgattcttactcacggtcatgaggatcatattgga
gctataccatatgttctgcgtgatttaaatgttccaatttatggcacaaaactcacactt
ggtcttgttgagataaaacttatggaatttggaatagatttaaatacggtaaagttattt
actgtcaaagcaggagatgtaattagttttgctaatatgcgcgtagagtttatcagaaca
acacattcgatagctgactctgttgctgttgcaatacacacaccacttggtcctattgtc
cacacaggtgatttcaaagtagacttcacgcctattgaaggtgaaccgattgacttgata
agatttgcagagctgggcaaacagggcgtccttgcgcttttgtgtgattcaacaaatgca
gaaaggcctggttttacattgtctgaaaggactgtgggtgccacgtttgacagaatattt
tcccaggctcagggaagagtaattgttgcaacattttcttcgcatattcacagagtacaa
caggttataaattcagcagaaaaacagggaagaaagatttgcgtcttgggaagaagcatg
gtgaatgttgtgaacaaagcacttgaactcgggtatctgaagatgccagatgggatgctg
attgatgttgatgaacttgataactaccctttgaacaggattgttcttattaccacgggt
agccaaggcgagcctatgtctgcgctttcacgaatggcttctgccgagcacaaaaaggta
gggattatacccggtgatgttgttataatctcagccgcgcccattcctggaaatgaaaag
tttgtaaatagagtaataaacgatttattcaggcaaggtgcacaggtgatatatgaagac
attgatgacattcatgtgtcaggtcatgcctgccaggaagagataaagcttatacacaat
cttacacgaccaaaatatagtattcccgtgcatggagagttcaaacacttgatacaccat
gcaaagcttgcaatggaacttggagaaaaaaacgtatttgtattagaaaatgggaaggtt
ttggagattacaaaagacggtgcaaaggttgttggaatggtgcaggcagggaatgtgctt
gttgatggacttggagttggggatgtaggaaatgttgttctgcgtgacaggcgtcatctt
gcccaggacgggcttttcattgttgtgctcacaattgattcgtcaacaagagatgttctt
tctgggccagatattatcacaagaggctttatatatataaaagaatctgagcccctgatt
gaagaggcgaaaagagtgataaaggatgttctttatttttgtaataaaaacgatattact
gagcctaacgcaataaaggtaattttaaaagataatctgagaaacttcttgtttgaaaag
acaagaagaaacccgatgattattccaattataaccgagatttag
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