Caldicellulosiruptor owensensis: Calow_0582
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Entry
Calow_0582 CDS
T01347
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
cow
Caldicellulosiruptor owensensis
Pathway
cow02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cow00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Calow_0582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cow03021
]
Calow_0582
Transcription machinery [BR:
cow03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Calow_0582
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
DUF4423
Motif
Other DBs
NCBI-ProteinID:
ADQ04159
UniProt:
E4Q4R7
LinkDB
All DBs
Position
671949..673202
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AA seq
417 aa
AA seq
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MTEQNMENNEVKNLNDQNINKETGSEQQQEVEKQLLASQKNENQEKQPAKKSTENKSEGK
KMSEEKKSLIREKVRELISLGQSKGFLTYSEIQEILDKVELDASQVENIYDTLESMGIDV
VDDRVSEEELLKDDLENLPEGIAIDDPVRMYLKEIGKIPLLTPEEEIELAKRIEQGDEEA
KKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWI
RQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVR
EILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNERE
KKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFLE
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgacagagcagaacatggaaaataatgaggtgaaaaacctcaatgaccaaaatataaat
aaagagactggaagcgaacagcagcaagaggttgaaaaacaattgcttgcatcacagaaa
aatgaaaatcaagaaaaacagcctgctaaaaagagcacagaaaacaaatcggaaggtaag
aaaatgagcgaagaaaaaaagagtcttataagagaaaaggtcagagaacttatatctctt
ggtcagagcaaaggttttctgacatattctgaaatacaggagattcttgacaaggtagaa
cttgatgcaagccaagttgaaaatatctacgataccttggagagcatgggaattgatgtt
gtagacgatagagtatcagaggaggagctattaaaagacgatttggaaaatctgcctgaa
ggtattgctatagatgaccctgtcaggatgtatttgaaggaaattggcaagattccactt
ttgacccctgaagaggagattgaacttgcaaagaggattgaacagggtgatgaggaggct
aaaaagaggcttgcagaagcaaacttaaggcttgttgtaagcatagcaaaaaggtatgtg
ggacgaggaatgttgtttttggacttaatccaagagggaaatcttggacttttaaaagca
gttgagaaatttgattacagaaaaggatataaattttcaacatatgcaacatggtggata
agacaagcaatcacaagagcaattgcagaccaggcaagaactattagaattcctgtgcac
atggttgagacaataaacaagttagttagggtatcacgccagcttttgcaagaaaaggga
agagaaccaacaccggaagagattgcaaaagagatgaacatgccagttgaaaaagtgaga
gagattctaaagattgcacaagagccggtatcattagagacgccaattggtgaggaagag
gacagtcacttaggtgactttattccagatgacgatgcgcttgcaccatctgaagctgct
gcatattcaatgctaaaagagcagcttttagaggttttggattctttaaacgaaagagaa
aagaaggtcttaaagctcagatttggccttgaagacggcagggctcgcaccttagaagag
gttggcaaggaattcaacgtgacacgtgaaagaatccgtcaaattgaggcaaaggcttta
agaaaactaagacatccgagcaggagtaagaaacttaaggattttttggagtag
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