Caldicellulosiruptor owensensis: Calow_0651
Help
Entry
Calow_0651 CDS
T01347
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cow
Caldicellulosiruptor owensensis
Pathway
cow03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cow00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Calow_0651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cow03021
]
Calow_0651
03400 DNA repair and recombination proteins [BR:
cow03400
]
Calow_0651
Enzymes [BR:
cow01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Calow_0651
Transcription machinery [BR:
cow03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Calow_0651
DNA repair and recombination proteins [BR:
cow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Calow_0651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ADQ04227
UniProt:
E4Q560
LinkDB
All DBs
Position
751106..754597
Genome browser
AA seq
1163 aa
AA seq
DB search
MDLFNFDAIKISLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECH
CGKYKKVKYKGVVCDKCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGVPSRMGLILDMT
PRNLEKVLYFGAYVVIDPGDVPNLEKKQVLSEKEYRELKEKYGDRFKAGMGAEAIKELLK
EIDLDKLSQELRQELETATGQKKLKIIKRLEVVEAFRKSGNRPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLMDLGAPDIIIRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLPKE
MALELFKPFVMKKLVEKGICNNIKNAKKAVERQRSEVWDILEEVIKDHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLSANNLL
KPADGKPIVVPTQDMVLGIYYLTLEKKGDKGEGMMFSSEEEALLAYEHKVVGLHASIKVK
RTAEVNGEVISGLVETTVGKIILNHVIPQDLGFVDRSKKENILKYEIDTLVDKKMLGKII
DRCIKIYGNTRTAEILDEIKELGFKFSTKGAITISVSDMVIPEIKQKLIAEAEQKVENIE
KLYRHGLISDQERYEQVISIWNQTKDKLTEELIQSLDEFNPIFMMANSGARGSKNQISQL
AGMRGLMANPSGKTIEMPIKSNFREGLNVIEFFISTHGARKGLADTALRTADSGYLTRRL
VDVAQDIIVREEDCGTDKGIWVEEIRDGTEVIETLEERIIGRYAASDVVDEKTGEVLVRK
SELITEEIAKKIIEAGINRVYVRSVLECKTRYGVCTKCYGLDLGTGQPVNVGEAVGIIAA
QAIGEPGTQLTMRTFHTGGIAGQDITQGLPRVEELFEARKPKGVAVISEIEGYVSIKEDK
KRTITVRNNNGEERTYEIPYGARLKVNDGDYVQAGDELTEGSINPHDLLKIKGPRGVQSY
LLAEVQKVYKMQGVDINDKHIEIIIRQMMKKVKIEEPGDTELLPGDIVEIHRFEEENDRA
IEEGKRPALGRRVLLGITKAALSTESFLSAASFQETTRVLTDAAIKGKVDPLIGLKENVI
IGKLIPAGTGMAKYRNIVIEENQ
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggacttattcaattttgatgctattaaaatcagtcttgcttctcctgaaaagataaga
gaatggtcgcgcggtgaggtaaaaaaacccgagactataaactatagaacactcaagccc
gaaaaggatggacttttctgtgaaaagatttttggtccaacaaaagactgggaatgccat
tgtggaaagtataaaaaggttaaatataaaggtgttgtttgtgacaagtgcggtgttgaa
gtaacaaaagcaaaggtaagacgtgagagaatggggcacattgaacttgctgcccccgtc
tctcacatctggtatttcaaaggtgttccaagcaggatgggacttattttagatatgact
ccgcgaaatttagaaaaggttttatattttggtgcttatgtagtaattgaccctggtgat
gtaccaaacttagaaaaaaagcaggttctttctgaaaaagaatacagagaactaaaagaa
aaatacggcgatagattcaaggcggggatgggagcagaggcaatcaaagaacttttgaaa
gagattgatcttgacaagctatcacaggagctcagacaagaacttgagacagcaacaggt
cagaaaaaattaaagataatcaaaagacttgaggttgttgaagcttttagaaagtctggt
aacagacctgaatggatgatacttgatgttatacctgtcatcccacctgaactcagaccc
atggtccaacttgacggtggaaggtttgcaacatcagacctgaatgacctttacagaagg
gtaataaacagaaacaacagactcaaaaaactcatggacttaggtgcaccggatataatt
atcagaaacgaaaagagaatgcttcaggaagctgttgatgcgcttattgacaatggaaga
agaggaagacctgtaacaggtccgggcaacaggccactgaagtcactttctgatatgctc
aaaggaaagcagggaaggttcaggcagaaccttctggggaaaagggtggactattcaggg
cgttctgttatagttgtagggcctgagttaaagatataccagtgcggtcttccaaaagaa
atggctttagagcttttcaaaccatttgtcatgaaaaagctggttgaaaaaggaatttgt
aataatataaaaaatgcaaaaaaagctgttgaaagacagagaagtgaagtatgggatata
ttagaagaagtaataaaagatcatccagttttattaaacagagcaccaactttacacagg
cttggtattcaggcatttgagcctgttttggttgaaggaagggctataagacttcatcca
cttgtctgtacagcatataatgctgactttgacggggaccagatggcagtgcatgtgcca
ctttctgccgaagctcaggctgaggcaaggtttttgatgttatctgcaaacaatctgtta
aagccagcagatggtaaaccaattgttgtgccaacacaggatatggttttgggaatttat
tacctcactcttgaaaagaagggtgacaagggtgagggtatgatgttctcatcagaagaa
gaagcacttttggcatatgaacacaaagttgttggtctccacgcgagtataaaggttaaa
aggacagcagaagtgaatggtgaagttatatcagggcttgttgagacaactgtgggtaaa
attatactaaatcatgtaataccacaggatcttggttttgttgatagaagcaaaaaagaa
aatattttgaagtatgaaattgatacacttgttgataaaaagatgttaggcaagattatt
gacagatgtataaaaatttatggaaatacacgaacagcagagatattggatgaaataaaa
gagctgggatttaaattttcaacaaaaggagcaattactatttcagtttcggatatggta
attccggaaatcaagcaaaagcttatagctgaagcagaacaaaaggttgagaatattgaa
aaactgtacaggcatggtttgatttctgatcaagaaagatatgaacaggtaatctctata
tggaaccagacaaaagacaagcttaccgaagagcttattcagagccttgatgagttcaat
ccaatattcatgatggcgaattcaggagcaagaggttccaaaaaccagatatcacagctt
gctggtatgcgaggacttatggcaaatccgtccggtaagacaatagagatgccgattaag
tcaaacttcagagaaggactcaatgttatagaatttttcatatcaacacatggtgcacga
aaaggacttgctgatacggctctcagaacggcagactctggttatttgacaagaagattg
gtggatgttgcacaggatataattgtaagggaagaggactgtgggacagacaaaggtata
tgggttgaagaaataagagatggcacagaggtaattgaaacgcttgaagagaggattatt
ggaaggtatgcagcttctgatgttgttgatgaaaagacaggcgaggtattggtaagaaaa
agtgagctcatcacagaagagatagcaaagaagataatagaggcaggcattaacagagta
tatgtaaggtcagttttagagtgtaagacaaggtatggtgtttgtacaaagtgttatgga
cttgaccttggaacaggccagccggtaaatgttggtgaagcagttggtataattgcagca
caggcgataggtgagccgggtacacagcttacaatgagaacattccacacagggggtatt
gctgggcaggacatcacgcaaggtcttccaagggttgaagagctgttcgaggcaagaaaa
ccaaaaggtgttgctgtgatttctgaaatagaagggtatgtttcaataaaagaggataaa
aagagaacaataacagtcagaaataacaatggtgaagagagaacgtatgagataccgtac
ggagcaagattaaaggtaaatgatggggattatgttcaggcaggggatgagctgacagaa
ggttcaataaatccgcacgatcttttgaagataaaaggaccaagaggtgttcagagctat
cttcttgcagaagttcagaaagtttacaagatgcagggtgttgatataaatgacaagcac
atagagataataatcagacagatgatgaagaaggtcaagatagaagagccgggtgacact
gaacttttaccaggcgacattgtagagatacacagatttgaagaagaaaacgacagagca
attgaagaaggtaagcgtcctgcacttggtagaagggtacttcttggaataacaaaggca
gcactttctacagaatcgttcttatctgctgcatcgttccaggagacaacaagagtattg
acagatgcagcaataaaagggaaagttgatcctctaattggtcttaaggagaatgtcatc
attggtaagctaattcctgcagggacaggaatggcaaagtacagaaatattgtgattgaa
gaaaatcagtag
DBGET
integrated database retrieval system
